Pairwise Alignments

Query, 619 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N1B4

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score = 1147 bits (2966), Expect = 0.0
 Identities = 586/628 (93%), Positives = 607/628 (96%), Gaps = 11/628 (1%)

Query: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVH+SFK+YARDLKFVSACIFGGVGMN
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQVQAMSRGVDVLVACPGRLLDL GQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 181 LPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL 240
           LP+KRQNLLFSATFS+DIT LAGKLLHNPERIEVTPPNTTVERIEQRVFRL A+HKR+LL
Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV 300
           AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAG V
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 361 LKSIERMTKQKIADGNLMGFDSSAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGSGGGGG 420
           LKSIERMTKQKIADG+LMGFD+SAVEAEKPE RERPDVRNPRNPRGP+GDGPNG GGGGG
Sbjct: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG 420

Query: 421 RKDKGKDKGGKEKPAATGRGDRPAREHKPREGTPAREQQRPA--PRAAADRAPDEFLDDD 478
           R+DKGKDK GKEK +A+GRG+RPARE KPREGTPAREQ++P+  PRAAADRAPDEFLDDD
Sbjct: 421 RRDKGKDK-GKEK-SASGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDD 478

Query: 479 VDNFGNRVDYVPQAKPAQGRGRRPGAPAQ--GAGAPRTGQPQ-GRQNGPRSSSGATTGTP 535
           VDNFGNRVDYVPQAKPAQGRGRRPGAPAQ  GAGAPR GQPQ GRQNGPR+SSG TTGTP
Sbjct: 479 VDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGAPRGGQPQGGRQNGPRNSSGGTTGTP 538

Query: 536 PAKRSGPRNGAPRDGQARREESR--NRRPARDEQPR-SEPAVQNPR-GPAPKIIHKESKS 591
           PAKR+GPRNGAPRDGQARRE+SR  NRRPARD+Q R SEPAVQNPR GPAPKIIHKESK+
Sbjct: 539 PAKRNGPRNGAPRDGQARREDSRSNNRRPARDDQQRSSEPAVQNPRGGPAPKIIHKESKA 598

Query: 592 DRFPTPEQLDQLPGRPRGEKPALLTRNR 619
           DRFPTPEQLDQLPGRPRGEKPALLTRNR
Sbjct: 599 DRFPTPEQLDQLPGRPRGEKPALLTRNR 626