Pairwise Alignments

Query, 619 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N1B4

Subject, 608 a.a., ATP-dependent RNA helicase RhlE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  483 bits (1242), Expect = e-140
 Identities = 283/584 (48%), Positives = 356/584 (60%), Gaps = 50/584 (8%)

Query: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M+F  L L+ A+V+A+   GY  PTP+Q  AIPAVL GRDL+  AQTGTGKT  F LP+L
Sbjct: 15  MTFDDLNLAPAIVQAVREHGYETPTPIQVEAIPAVLAGRDLLGGAQTGTGKTAAFTLPML 74

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
            RL  N    KS R G    R LVLTPTRELAAQV ES +VY + L   S  +FGGVGMN
Sbjct: 75  HRL-ANSERAKS-RFGGVGIRALVLTPTRELAAQVEESVRVYGKHLSLTSTVVFGGVGMN 132

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+ AM RGVD+LVA PGRLLDL  QG +DLS V++LVLDEADRMLDMGF+HDVKK+LA 
Sbjct: 133 PQINAMKRGVDILVATPGRLLDLQQQGFLDLSTVQMLVLDEADRMLDMGFIHDVKKILAL 192

Query: 181 LPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL 240
           +P ++Q+LLFSATFS +I DLA  LL +P  I+VTP NTTV+RI Q +  +    K++LL
Sbjct: 193 VPKEKQSLLFSATFSDEIRDLASALLKDPLHIQVTPRNTTVQRITQVIHPVGRGKKKALL 252

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV 300
            H+I    W QVLVFTRTK GAN +AEYL K+G+ A+A+HGNKSQ ART+ALA FK+GE+
Sbjct: 253 VHIINQHNWSQVLVFTRTKFGANNVAEYLTKNGIHAMALHGNKSQGARTQALAGFKSGEI 312

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R LVATDIAARG+DID+LPHVVN+E+PN+ EDYVHRIGRTGRAG SGEA++LV+ DEE  
Sbjct: 313 RALVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTGRAGNSGEAVNLVSLDEEGF 372

Query: 361 LKSIERMTKQKI---------------ADGNLMGFD---------------SSAVEAEKP 390
           +  IER TKQ+I               A+   MG                 ++A +A + 
Sbjct: 373 MMEIERFTKQQIPVQIFPEFMPEPGEKAEPIAMGRQTIWGGAGKPPSREVMAAAAKAART 432

Query: 391 EVRERPDVRNPRNPRGPRGDGPNGSGGGGGRKDK----GKDKGGKEKPAATGRGDRPARE 446
           E+ +R   +    P+G       G+GGGGG++ +    G    G       G G      
Sbjct: 433 EMLQRVREKKANEPQG------RGNGGGGGQRQRPAGDGSQADGPRGEGRRGNGGGQRAN 486

Query: 447 HKPREGTPAREQQRPAPRAAADRAPDEFLDDDVDNFGNRVDYVPQAKPAQGRGRRPGAPA 506
                G   R+ QR        R P E       + G R D  P+ +   G  R+PG P 
Sbjct: 487 GNGGGGNGQRQGQRHGGGQQGQRPPRE-------DRGFREDRGPREEREPGAERQPG-PN 538

Query: 507 QGAGAPRTGQPQGRQNGPRSSSGATTGTPPAKRSGPRNGAPRDG 550
              G+ R  +P+ R   P         +  A R+G R G  + G
Sbjct: 539 AHLGSLRIREPRPRAANPGGQPDPLRTSIDAMRTGNRGGKGKGG 582