Pairwise Alignments

Query, 619 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N1B4

Subject, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

 Score =  488 bits (1257), Expect = e-142
 Identities = 264/470 (56%), Positives = 332/470 (70%), Gaps = 20/470 (4%)

Query: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF SLGLS  ++RA+   GY EPTP+QQ+AIPAVL+GRDLM +AQTGTGKT GF LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120
           + L       +    G R  R L+LTPTRELAAQ+ E+ + Y++ L   S  +FGGV +N
Sbjct: 61  QHLITR----QPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSIN 116

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  +  GVDVLVA PGRLLDL  Q +V L  VEILVLDEADRMLDMGF+HD+++VL +
Sbjct: 117 PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTK 176

Query: 181 LPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL 240
           LP+KRQNLLFSATFS DI  LA KLLHNP  IEV   NT  +++ Q V  +    KR LL
Sbjct: 177 LPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELL 236

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV 300
           +H+I  G W+QVLVFTRTKHGAN LAE L+K G+ + AIHGNKSQ ART+ALADFK+G++
Sbjct: 237 SHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDI++LPHVVN+ELPNV EDYVHRIGRTGRA  +GEA+SLV  DE KL
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 361 LKSIERMTKQKIADGNLMGFDSSAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGSGGGGG 420
           L+ IE++ K++I    + G++        P ++  P     +N R  RG G  G GGG G
Sbjct: 357 LRDIEKLLKKEIPRIAIPGYEPD------PSIKAEP----IQNGRQQRGGGGRGQGGGRG 406

Query: 421 RKDKGKDKGGKEKPAATGRGDRPAREHKPREGTPAREQQ---RPAPRAAA 467
           ++   + +GG  K A+    ++P+R  +  +  PA EQQ   RP   AAA
Sbjct: 407 QQQPRRGEGG-AKSASAKPAEKPSR--RLGDAKPAGEQQRRRRPRKPAAA 453