Pairwise Alignments

Query, 152 a.a., Regulator of sigma D from Pseudomonas fluorescens FW300-N1B4

Subject, 158 a.a., stationary phase protein, binds sigma 70 RNA polymerase subunit from Escherichia coli BL21

 Score = 76.3 bits (186), Expect = 2e-19
 Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 14/148 (9%)

Query: 1   MLESCQNAQERWGGVHLLIDRWLQER-HELVRAYDALGDKP---EALGENRKQLQEFCGV 56
           ML    N  ER  G + L+DRWL  R H LV  Y+ +G KP     +  N K L +FC  
Sbjct: 1   MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60

Query: 57  LVDYVSAGHFEIYEQLTGEARAFGDTRGLELAETIYPRIDVITEKLLAFNDLC------- 109
           LVDY+SAGHF IYE++  +    G    L  A  I+P+++  T++++ + D         
Sbjct: 61  LVDYLSAGHFSIYERILHKLEGNGQ---LARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117

Query: 110 DAGKCVAEKFKELGGLLHERFELEDCLI 137
           D      +   ++G  L  RF LED LI
Sbjct: 118 DNYLEFQQVLSDIGEALEARFVLEDKLI 145