Pairwise Alignments

Query, 1457 a.a., Rhs-family protein from Pseudomonas fluorescens FW300-N1B4

Subject, 1464 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score = 2181 bits (5652), Expect = 0.0
 Identities = 1049/1342 (78%), Positives = 1168/1342 (87%), Gaps = 7/1342 (0%)

Query: 1    MSDALWAARLGDALDHASMMADILGGVLEVAANIAITALATAAVVAATGITVVTGGLGCF 60
            MSDALWAAR+GDAL H SMMADILGGVLEVAAN+AITALATAAV AA G+T+ T G+G  
Sbjct: 1    MSDALWAARMGDALTHTSMMADILGGVLEVAANVAITALATAAVAAAVGVTIATAGIGGC 60

Query: 61   VLGLVVGTIVGLAMSKTGADKGLSNLCESFSNALFPPTVQANILTGSTNTLTNNIPAARA 120
            +LG VVG +VG+AMSKTGADKGLS +CESF+NALFPP V+A I  GST+T  N+IPAARA
Sbjct: 61   ILGAVVGIVVGMAMSKTGADKGLSKMCESFANALFPPVVEATIAVGSTDTFVNSIPAARA 120

Query: 121  AGAIPSHVAPAGTELEA------PEPEAEPSYLDMAESFFSQMWRPTVATPAPGAVPKPL 174
            AG+IPSHVAPAGTELE       PEP  EP +LDMAE FFSQ+WRPTVATPAPG VP   
Sbjct: 121  AGSIPSHVAPAGTELEQVPPEPDPEPRPEPGFLDMAEGFFSQLWRPTVATPAPGVVPALT 180

Query: 175  DLLVCMKHPPMPPQFMAEGSDKVTINGQPAVRSGDRSTCDAKVVSSGLISSNVTIGGGSV 234
            D+++C +HPPMPPQ +AEGSDKVTINGQPAVRSGDRS CDA VVSSGLIS NVTIGGG+V
Sbjct: 181  DMVLCARHPPMPPQLLAEGSDKVTINGQPAVRSGDRSMCDATVVSSGLISPNVTIGGGTV 240

Query: 235  VVREIRSGKTPGVGLAVTALLMLKGGKGKFFSKLPCMLIGGATSMAVSSAMGAMANAAMG 294
            VV+EIRSGKTPGVGLA+ AL+MLKG KGK  S LPCML+ G TS AVS AMGA ANA MG
Sbjct: 241  VVQEIRSGKTPGVGLAIEALMMLKGAKGKTLSNLPCMLLAGVTSYAVSQAMGAAANATMG 300

Query: 295  SSNPVHAATGAKVLGGDEELDFVLPGILPMDWQRFYNSRDERRDGLFGAGWSVSYEVCVE 354
            S NPVHAATGAKVLGG+ ELDFVLPGILP+DWQRFYNSRDERR G+FGAGWSV YE+ VE
Sbjct: 301  SPNPVHAATGAKVLGGETELDFVLPGILPIDWQRFYNSRDERRTGMFGAGWSVPYEISVE 360

Query: 355  ILPHSEGGETLVYTDEQGRRIDMGSIPLGGAVFSAGEGLSVRRHVNGQLLIESDDGVYRL 414
            IL H +GGE L+YTDEQGRRI++G I LG A+FS GEGLS+RRH NGQLLIES DG+YRL
Sbjct: 361  ILLHPDGGEELLYTDEQGRRINLGGISLGSAMFSPGEGLSIRRHRNGQLLIESADGIYRL 420

Query: 415  FNPTPGNTVLLRLDQLGDRNDNRIYLDYDDVGQLVRLRDTFDLVQVELIRERDRVARVER 474
            F  TP N  LLRL QLGDRND+RI+L+YD  G+LV+L D  DLVQVELIR++  V+++ER
Sbjct: 421  FESTPANVSLLRLTQLGDRNDHRIHLNYDAAGRLVQLHDNLDLVQVELIRDQGHVSKIER 480

Query: 475  LYPDQRREILASYAYDTRGNLAEVRDATGQVQRCFSYDAGQRMVEHQLPTGLRCFYEWAL 534
            +YPDQRRE+L SY+Y+  G+L EVRDATGQ+QR FSYDAG+RMVEHQLP GLRCFYEWAL
Sbjct: 481  VYPDQRREVLVSYSYNATGDLTEVRDATGQIQRRFSYDAGRRMVEHQLPAGLRCFYEWAL 540

Query: 535  IEDLEWRVVRHWTDEGDAYQFDYDLVAGVTRITDGLQRVSTRRWNAQHQITEYTDNLGQT 594
            +ED+EWRV  HWTDEGDAY F+YDL AGVTRITDG+QR+S R WN QHQIT+Y+DNLGQT
Sbjct: 541  VEDVEWRVSHHWTDEGDAYHFEYDLSAGVTRITDGMQRISIRHWNNQHQITKYSDNLGQT 600

Query: 595  WQFEWNDERQLLSATDPQGGRYEYSYDDAGNLIGETDPLGRSDSTLWLELWALPLVETDA 654
            W F+WNDERQLL ATDPQGGR+EYSYD+ GNLI E DPLGR DST+WLE WALPLVET+ 
Sbjct: 601  WLFDWNDERQLLGATDPQGGRFEYSYDETGNLISEIDPLGRRDSTMWLEHWALPLVETNP 660

Query: 655  AGNSWQYRYDQRGNCIAETDPLGHITRYRYDTHGQVVEIIDATGKSKKLRWSPFGQLVEH 714
            A +SW Y+YDQRGNCIA TDP+GHITRYRYD+HG  VEIIDATGKSKKLRWSPFGQLVEH
Sbjct: 661  ANHSWHYQYDQRGNCIAATDPMGHITRYRYDSHGHPVEIIDATGKSKKLRWSPFGQLVEH 720

Query: 715  IDCSGYPTRFNYDHRGYLQTITDALGERTQFSYDAQGRLLSSQLPDGRTEQYQRDVSGQL 774
            IDCSGY TRF YD RG+LQ ITDALGERTQFS+DA+GRL+SSQLPDGRTEQY RD SG L
Sbjct: 721  IDCSGYSTRFGYDERGFLQFITDALGERTQFSHDARGRLISSQLPDGRTEQYTRDTSGLL 780

Query: 775  TGYTDPAGHTTLYQHNRRGQVRQRTDAHGRQVQFGYDSYGRLQALTNENGESYRFAWDAG 834
             GYTDPAGHTTLYQHNRRGQV QRTDA+GR+V+F YDSYGRL+AL NEN ESY+F WDAG
Sbjct: 781  LGYTDPAGHTTLYQHNRRGQVCQRTDAYGRRVKFAYDSYGRLKALINENEESYQFVWDAG 840

Query: 835  DRLTEQQDLDGSAKRYTYDLLDNVAAVTVVPALYGNGLAVVPETPLAPIVHRLERDAAGR 894
            DRLTEQ+DLDGSAKRYTYDLL+++ A+T VPA + N L    ETP +PIVHR+ERDA GR
Sbjct: 841  DRLTEQRDLDGSAKRYTYDLLNHMTAMTAVPAHFDNTLVNAAETP-SPIVHRMERDAVGR 899

Query: 895  LIAKVTDDGRTDYTYDPLDQLTAVTFTDHQGNAQTLSFAYDALGQLLEEQSAAGSLHHHY 954
            LIAK+TDDGRT+Y YD LDQL AVTFTD  G+ Q LSFAY  LG+LL EQS  G+L HHY
Sbjct: 900  LIAKMTDDGRTEYVYDSLDQLCAVTFTDLSGDTQVLSFAYAPLGRLLTEQSPMGTLQHHY 959

Query: 955  DELGNLIQTQLPDGRWINRLHYGSGHLHQINLDGQVISDFERDRLHREVLRTQGQISTRS 1014
            DELGNL QTQLPDGRW+NRL+YGSGHLHQINLDG+VISDFERDRLHREVLRTQGQ+STRS
Sbjct: 960  DELGNLTQTQLPDGRWLNRLYYGSGHLHQINLDGEVISDFERDRLHREVLRTQGQLSTRS 1019

Query: 1015 EYDRSGRLRARQRRHSSQPSLMPAAVQKHFEYDPADNLIGKLDQQPATQHRQLLHYDATG 1074
            EYDRSGRLR+R  RHS QP L PAA+Q+HFEYDPADNL GKLDQQP TQ RQLLHYDATG
Sbjct: 1020 EYDRSGRLRSRHCRHSHQPMLTPAAMQQHFEYDPADNLTGKLDQQPTTQQRQLLHYDATG 1079

Query: 1075 RIIASQDSLHGQRETFAYDAAANLLDGPQPGAGLVVHNKLLTYQDKRYRYDAFGRMIEKR 1134
            RI ASQD+L GQRETF YDAAANLLD P PGAGLVVHNKL+TYQDKRYRYD FGRMIEKR
Sbjct: 1080 RITASQDNLLGQRETFTYDAAANLLDSPHPGAGLVVHNKLMTYQDKRYRYDGFGRMIEKR 1139

Query: 1135 SAKRGLQRFGYDAESRLIEVRNDNGSVVRMTYDPLGRRIEKTGHDSNGYPLGETRFTWDG 1194
            S  RG+QRF YDAESRLIEVRN+NG+VV+M YDPLGRRI+KT H  +GYPL ETRF+WDG
Sbjct: 1140 STSRGVQRFAYDAESRLIEVRNENGNVVKMHYDPLGRRIKKTEHGIDGYPLSETRFSWDG 1199

Query: 1195 LRLLQEHRHQQTSLYLYEDEGYEPLARVDGTGPLQKIRYYHNDLNGLPEQLTEADGHNVW 1254
            LRLLQEH++ QTSLY+YE+EGYEPLARVDG G LQK+RYYHNDLNGLP QL+EADGH VW
Sbjct: 1200 LRLLQEHKYSQTSLYVYENEGYEPLARVDGIGQLQKLRYYHNDLNGLPAQLSEADGHIVW 1259

Query: 1255 QATYRVWGNTLEEVREPYYIEEQNLRFQGQYLDRETGLHFNTFRFYDPDVGRFTTPDPIG 1314
            QATYRVWGNTLEEVREP+YIEEQNLRFQGQYLDRETGLH+NTFRFYDPD+GRFT+PDPI 
Sbjct: 1260 QATYRVWGNTLEEVREPHYIEEQNLRFQGQYLDRETGLHYNTFRFYDPDIGRFTSPDPIS 1319

Query: 1315 LDGELNLYQYAPNPIAWVDPWG 1336
            L G LNLY Y  NP +WVDP G
Sbjct: 1320 LMGGLNLYLYGFNPFSWVDPLG 1341