Pairwise Alignments
Query, 1457 a.a., Rhs-family protein from Pseudomonas fluorescens FW300-N1B4
Subject, 1411 a.a., rhsB element core protein RshB (NCBI) from Escherichia coli BW25113
Score = 276 bits (707), Expect = 8e-78
Identities = 276/987 (27%), Positives = 402/987 (40%), Gaps = 165/987 (16%)
Query: 484 LASYAYDTRGNLAEVRDATGQVQRCFSYDAGQR--MVEHQLPTGLRCFYEWALIEDLEWR 541
L Y + RG LA V D +G+ R F+YD R MV H+ Y + D + R
Sbjct: 311 LVRYGWTPRGELAVVYDRSGKQVRSFTYDDKYRGRMVAHRHTGRPEIRYRY----DSDGR 366
Query: 542 VVRHWTDEGDAYQFDYDLVAGVTRITDGLQR---VSTRRWNAQHQITEYTDNLGQTWQFE 598
V G +Y + Y+ ITD L R + T+ ++ + G Q +
Sbjct: 367 VTEQLNPAGLSYTYQYE--KDRITITDSLDRREVLHTQGEAGLKRVVKKEHADGSVTQSQ 424
Query: 599 WNDERQLLSATDPQGGRYEYSYDDAGNLIGE-TDPLGRSDSTLWLELWALPLVETDAAGN 657
++ +L + TD G EYS D LI T P GR+ + + L T G
Sbjct: 425 FDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHNQLTSA-TGPDGL 483
Query: 658 SWQYRYDQRGNCIAETDPLGHITRYRYDT-HGQV-VEIIDATGKSKKLRWSPFGQLVEHI 715
+ YD+ G I ET P G ITRYRYD H + DATG K + WS +GQL+
Sbjct: 484 ELRREYDELGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLLSFT 543
Query: 716 DCSGYPTRFNYDHRGYLQTITDALGERTQFSYDAQGRLLSSQLPDGRTEQYQRDVSGQLT 775
DCSGY TR+++D G + + G +YD++G+L++ + G +Y+ +++G LT
Sbjct: 544 DCSGYVTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNIAGDLT 603
Query: 776 GYTDPAGHTTLYQHNRRGQVRQRTDAHGRQVQFGYDSYGRLQALTNENGESYRFAWDAGD 835
P G Q++ G+ RT G YD+ GR+ LT+ENG F +D D
Sbjct: 604 AVIAPDGSRNGTQYDAWGKA-VRTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLD 662
Query: 836 RLTEQQDLDGSAKRYTYDLLDNVAAVT----VVPALYGNGLAVVPETPLAPIVHRLERDA 891
RL ++ DG +RY +DL + V Y + T R + D
Sbjct: 663 RLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVKGETAERWQYDE 722
Query: 892 AGRL--IAKVTDDGRT--DYTYDPLDQLTAVTFTDHQGNAQTLSFAYDALGQLLEEQSAA 947
G L I+ +++ R Y YD +LT T H + L + ++
Sbjct: 723 RGWLTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEALLWQHET----------- 771
Query: 948 GSLHHHYDELG---NLIQTQLPDGRWINRLHYGSGHLHQINLDGQVISDFERDRLHREVL 1004
H Y+ G I LP W+ YGSG+L + L + ++ RDRLHRE L
Sbjct: 772 ---RHAYNAQGLANRCIPDSLPAVEWLT---YGSGYLAGMKLGDTPLVEYTRDRLHRETL 825
Query: 1005 RTQGQISTRSEYDRSGRLRA--------------------------RQRRHSSQPSL--- 1035
R+ G+ + Y +G+L++ RQ R S +
Sbjct: 826 RSFGRYELTTAYTPAGQLQSQHLNSLLSDRDYTWNDNGELIRISSPRQTRSYSYSTTGRL 885
Query: 1036 ----MPAA---VQKHFEYDPADNLIGKLDQQP------------ATQHRQLLHYDATGRI 1076
AA ++ + DPA N + + P A L YD GR+
Sbjct: 886 TGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYRYDRHGRL 945
Query: 1077 IASQDSL--------HGQRETFAYDAAANLLDGPQPGAGLVVHNKLLTYQD----KRYRY 1124
D + + + YD+ L VH Y++ RY Y
Sbjct: 946 TEKTDLIPEGVIRTDDERTHRYHYDSQHRL-----------VHYTRTQYEEPLVESRYLY 994
Query: 1125 DAFGRMIEKR--------------SAKRGLQRFGYDAESRLIEVRNDNGSVVRM----TY 1166
D GR + KR S K + +G+D + RL ++ND + + ++
Sbjct: 995 DPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGD-RLTTIQNDRSRIQTIYQPGSF 1053
Query: 1167 DPLGRRIEKTGH--------------DSNGYPLGETRFT------WDGL-------RLLQ 1199
PL R TG S G G F D L R+ +
Sbjct: 1054 TPLIRVETATGELAKTQRRSLADALQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSE 1113
Query: 1200 EHRHQQTSLYLYEDEGYEPLARVDGTGPLQKIRYYHNDLNGLPEQLTEADGHNVWQATYR 1259
E R S L ++ + V P +KI YH D GLP L +G W A Y
Sbjct: 1114 ESRRWLASCGLTVEQMQNQMDPV--YTPARKIHLYHCDHRGLPLALISTEGATAWCAEYD 1171
Query: 1260 VWGNTLEEVREPYYIEEQNLRFQGQYLDRETGLHFNTFRFYDPDVGRFTTPDPIGLDGEL 1319
WGN L E P+ ++ Q +R GQ D E+GL++N R+YDP GR+ T DPIGL G
Sbjct: 1172 EWGNLLNE-ENPHQLQ-QLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGW 1229
Query: 1320 NLYQYAPNPIAWVDPWGWKCWGTARKG 1346
NLY Y NPI+ +DP G W A+ G
Sbjct: 1230 NLYGYQLNPISDIDPLGLSMWEDAKSG 1256
Score = 206 bits (525), Expect = 1e-56
Identities = 268/1092 (24%), Positives = 425/1092 (38%), Gaps = 185/1092 (16%)
Query: 273 IGGATSMAVSSAMGAMANAAMGSSNPVHAATGAKVLGGDEELDFVLPGILPMDWQRFYNS 332
IG T +A S G + S +PV+ GAKVL G E D LPG LP R Y+S
Sbjct: 28 IGAPTGVACSVCPGGVT-----SGHPVNPLLGAKVLPG--ETDIALPGPLPFILSRTYSS 80
Query: 333 RDERRD---GLFGAGWSVSYEVCVEILPHSEGGETLVYTDEQGRRIDMGSIPLGGAVFSA 389
+ G G GW + ++ +++ + TL+ +D GR + + G +S
Sbjct: 81 YRTKTPAPVGSLGPGWKMPADIRLQLRDN-----TLILSDNGGRSLYFEHLFPGEDGYSR 135
Query: 390 GEGLSVRRHVNGQLLIESDDGVYRLFNPTPGNTVLLRLDQLGDRNDNRIYLDYDDVGQLV 449
E L + R G ++ + L+ P LRL N + +G
Sbjct: 136 SESLWLVR--GGVAKLDEGHRLAALWQALPEE---LRLSPHRYLATNSPQGPWWLLGWCE 190
Query: 450 RLRDTFDLVQVELIRER------DRVARVERLYPDQRREILASYAYDTRGNLAEVR-DAT 502
R+ + +++ L R DR R + + + E T G R T
Sbjct: 191 RVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHREAAGEFSGEITGVTDGAWRHFRLVLT 250
Query: 503 GQVQRCFSYDAGQRMV-----------------EHQLPTGLRCFYEWALIEDLEW----- 540
Q QR + +A Q+ + E+ G+R W L D E+
Sbjct: 251 TQAQR--AEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVW-LTHDPEYPENLP 307
Query: 541 --RVVRH-WTDEGD-------------AYQFDYDLVAGVTRITDGLQRVSTR-RWNAQHQ 583
+VR+ WT G+ ++ +D D G R R R+++ +
Sbjct: 308 AAPLVRYGWTPRGELAVVYDRSGKQVRSFTYD-DKYRGRMVAHRHTGRPEIRYRYDSDGR 366
Query: 584 ITEYTDNLGQTWQFEWNDER----------------------QLLSATDPQGGRYEYSYD 621
+TE + G ++ +++ +R +++ G + +D
Sbjct: 367 VTEQLNPAGLSYTYQYEKDRITITDSLDRREVLHTQGEAGLKRVVKKEHADGSVTQSQFD 426
Query: 622 DAGNLIGETDPLGRSDSTLWLELWALPLVETDAAGNSWQYRYDQRGNCIAETD------- 674
G L +TD GR+ + L T G + + Y+ + T
Sbjct: 427 AVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHNQLTSATGPDGLELR 486
Query: 675 --------------PLGHITRYRYDT-HGQV-VEIIDATGKSKKLRWSPFGQLVEHIDCS 718
P G ITRYRYD H + DATG K + WS +GQL+ DCS
Sbjct: 487 REYDELGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLLSFTDCS 546
Query: 719 GYPTRFNYDHRGYLQTITDALGERTQFSYDAQGRLLSSQLPDGRTEQYQRDVSGQLTGYT 778
GY TR+++D G + + G +YD++G+L++ + G +Y+ +++G LT
Sbjct: 547 GYVTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNIAGDLTAVI 606
Query: 779 DPAGHTTLYQHNRRGQVRQRTDAHGRQVQFGYDSYGRLQALTNENGESYRFAWDAGDRLT 838
P G Q++ G+ RT G YD+ GR+ LT+ENG F +D DRL
Sbjct: 607 APDGSRNGTQYDAWGKA-VRTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLI 665
Query: 839 EQQDLDGSAKRYTYDLLDNVAAV----TVVPALYGNGLAVVPETPLAPIVHRLERDAAGR 894
++ DG +RY +DL + V Y + T R + D G
Sbjct: 666 QETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVKGETAERWQYDERGW 725
Query: 895 L--IAKVTDDGR--TDYTYDPLDQLTAVTFTDHQGNAQTLSFAYDALGQLLEEQSAAGSL 950
L I+ +++ R Y YD +LT T H + L + ++
Sbjct: 726 LTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEALLWQHET-------------- 771
Query: 951 HHHYDELG---NLIQTQLPDGRWINRLHYGSGHLHQINLDGQVISDFERDRLHREVLRTQ 1007
H Y+ G I LP W L YGSG+L + L + ++ RDRLHRE LR+
Sbjct: 772 RHAYNAQGLANRCIPDSLPAVEW---LTYGSGYLAGMKLGDTPLVEYTRDRLHRETLRSF 828
Query: 1008 GQISTRSEYDRSGRLRARQRRHSSQPSLMPAAVQKHFEYDPADNLIGKLDQQPATQHRQL 1067
G+ + Y +G+L+++ ++ +Y DN G+L + + + +
Sbjct: 829 GRYELTTAYTPAGQLQSQHLN----------SLLSDRDYTWNDN--GELIRISSPRQTRS 876
Query: 1068 LHYDATGRIIASQDSLHGQ--RETFAYDAAANLLDGPQ--PGAGLVV--HNKLLTYQDKR 1121
Y TGR+ + R +A D A N L P+ P + L + N++
Sbjct: 877 YSYSTTGRLTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYL 936
Query: 1122 YRYDAFGRMIEK---------RSAKRGLQRFGYDAESRLIEVRNDNGS----VVRMTYDP 1168
YRYD GR+ EK R+ R+ YD++ RL+ R YDP
Sbjct: 937 YRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYEEPLVESRYLYDP 996
Query: 1169 LGRRIEK---------TGHDSNGYPLGETRFTWDGLRLLQEHRHQQTSLYLYEDEGYEPL 1219
LGRR+ K TG S T + WDG RL + +Y+ + PL
Sbjct: 997 LGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRSRIQTIYQPGSFTPL 1056
Query: 1220 ARVD-GTGPLQK 1230
RV+ TG L K
Sbjct: 1057 IRVETATGELAK 1068