Pairwise Alignments

Query, 366 a.a., Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake from Pseudomonas fluorescens FW300-N1B4

Subject, 374 a.a., hypothetical protein (NCBI) from Escherichia coli BW25113

 Score =  222 bits (566), Expect = 1e-62
 Identities = 141/308 (45%), Positives = 183/308 (59%), Gaps = 12/308 (3%)

Query: 56  GLPLACAEARRSSEIRDRASHALAWLERPGQHLLMWDQPDYPALLAQISDAPPLLFAAGD 115
           GL L  A+ R  S  R     +L WLE+P  HL+  D   YP  L   +D P  LF  G+
Sbjct: 43  GLTLRQAQ-RFLSFPRKSIESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEGE 101

Query: 116 PGILEKPQLAMVGSRRASRPGMDTAAAFSRTLAGAGFVITSGLALGIDAAAHQAALDVGG 175
              L   QLA+VGSR  S  G      F  TLA  G  ITSGLA GID  AH+AAL V G
Sbjct: 102 LHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVNG 161

Query: 176 QTVGVLGTGLENFYPQRNRRLADAMIASGSAVLSEFPLDAGPSPSNFPRRNRIISGLSLG 235
            ++ VLG GL   +P+R+ RLA +++  G A++SEFPLD  P   NFPRRNRIISGLS G
Sbjct: 162 VSIAVLGNGLNTIHPRRHARLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKG 221

Query: 236 VLVVEASVASGSLITARLAAEQGREVYAIPGSIHHPGAKGCHQLIRDGAVLVETIEHILE 295
           VLVVEA++ SGSL+TAR A EQGREV+A+PG I +PG++G H LI+ GA+LV   E ILE
Sbjct: 222 VLVVEAALRSGSLVTARCALEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILE 281

Query: 296 ALR-GWQRLPLSTE----TPTETHPLL----ILLHAAPHTS--EALAVTSGWALSKVLAA 344
            L+ G   LP + E    +P +    L    +L +     +  + +A  +G  + +V+  
Sbjct: 282 NLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQ 341

Query: 345 LTELEMDG 352
           L ELE+ G
Sbjct: 342 LLELELAG 349