Pairwise Alignments

Query, 366 a.a., Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake from Pseudomonas fluorescens FW300-N1B4

Subject, 380 a.a., DNA processing chain A from Agrobacterium fabrum C58

 Score =  194 bits (493), Expect = 3e-54
 Identities = 136/364 (37%), Positives = 188/364 (51%), Gaps = 30/364 (8%)

Query: 9   ISPAELEARLRLHRLPELGPARFKKLLEAFGSASKAISAPASAWRALGLPLACAEARRSS 68
           +S  +  A LRL R   +GP  F++L+  FGSA KA+ A         LP        S 
Sbjct: 13  LSARQRVAWLRLIRSDNIGPVTFRELINHFGSAEKALDA---------LPELSKHGGSSR 63

Query: 69  EIR----DRASHALAWLERPGQHLLMWDQPDYPALLAQISDAPPLLFAAGDPGILEKPQL 124
            +R      A   +   E+ G   +   +PDYP  L Q+  APPL+   G      +  +
Sbjct: 64  RLRIATPSEAEGEIETAEKFGARFIGIGEPDYPPALRQMDGAPPLIAMKGSADAATRACV 123

Query: 125 AMVGSRRASRPGMDTAAAFSRTLAGAGFVITSGLALGIDAAAHQAALDVGGQTVGVLGTG 184
            +VGSR AS  G   AA  +R    AG+ I SGLA GIDAAAH+A+L  G  TV +L  G
Sbjct: 124 GIVGSRNASINGAKFAAMLARDCGRAGYSIASGLARGIDAAAHRASLATG--TVAMLAGG 181

Query: 185 LENFYPQRNRRLADAMIASGSAVLSEFPLDAGPSPSNFPRRNRIISGLSLGVLVVEASVA 244
           L+  YPQ N  L   +   G A +SE P    P   +FPRRNR+I+G+SLGV++VEA+  
Sbjct: 182 LDRPYPQENFGLLQDIYDQGGATISEMPFGWEPRARDFPRRNRLIAGVSLGVVIVEAAER 241

Query: 245 SGSLITARLAAEQGREVYAIPGSIHHPGAKGCHQLIRDGAVLVETIEHILEALRGWQ--R 302
           SGSLITARLA E GR V+A+PGS      +G ++LI++GA+L      ILEALR     +
Sbjct: 242 SGSLITARLAGEAGRLVFAVPGSPLDARCEGTNRLIKEGAMLTTGAADILEALRPLMEPQ 301

Query: 303 LP-------------LSTETPTETHPLLILLHAAPHTSEALAVTSGWALSKVLAALTELE 349
           LP             +S     E   +   L  +P   + +   +G++ + V   L EL+
Sbjct: 302 LPYDCKIEEPRSDEEMSPPGDDERSVIASALGPSPVEIDDIIRHTGFSAAAVHLVLLELD 361

Query: 350 MDGR 353
           + GR
Sbjct: 362 IAGR 365