Pairwise Alignments

Query, 448 a.a., alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas fluorescens FW300-N1B4

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  289 bits (739), Expect = 1e-82
 Identities = 174/453 (38%), Positives = 257/453 (56%), Gaps = 16/453 (3%)

Query: 10  RILLVDDESAILRTFRYCLEDEGYSVATATSAAQAEALLQRQVFDLCFLDLRLGEDNGLD 69
           RIL+VDDE  + R        +G+    A +   A  L      D+  +D+R+ E +G+ 
Sbjct: 6   RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65

Query: 70  VLAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQL 129
            L +MR       V+++TA++ V+TAV+A++ GA DY++KP   D+L L   + L+++ +
Sbjct: 66  ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSM 125

Query: 130 SARLEALEGEVRKPKEG--LDSHSPAMKVVLETARQVASTDANILILGESGTGKGELSRA 187
              +  L   +    +   + ++SPAM  + +   ++A + A++LI GESGTGK  ++RA
Sbjct: 126 KKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARA 185

Query: 188 IHGWSKRQKKSCVTINCPSLTAELMDSELFGHSRGAFTGASESTLGRVNQADGGTLFLDE 247
           IH  S+R K   + +NC +L   L++SELFGH +GAFTGA     G   +A+ GTL LDE
Sbjct: 186 IHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245

Query: 248 IGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYR 307
           IG+ PL LQ KLLR +Q++E+ER+G   T + D+RI+AATN +L+ MV++G FREDL YR
Sbjct: 246 IGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYR 305

Query: 308 LNVITLHLPPLRERREDILNLADRFLARFVKEYSRPARCFSDEAREALLSYRWPGNIREL 367
           LNVI L LPPLR+RREDI  LA+ FL +F  E  R        A   L ++ WPGNIREL
Sbjct: 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIREL 365

Query: 368 RNVVERASI-----------ICPQERVELSHLGMAETPTNHTPRIGAALSLDELEKAHIG 416
            NV+ERA +           + PQ R  + + G  E  T           +  +EK  I 
Sbjct: 366 SNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAG--EVKTAPVGERNLKEEIKRVEKRIIM 423

Query: 417 AVLATAD-TLDQAAKTLGIDASTLYRKRKQYNL 448
            VL   +    + A  LGI    L  K ++Y +
Sbjct: 424 EVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456