Pairwise Alignments
Query, 1140 a.a., Pyoverdine sidechain non-ribosomal peptide synthetase PvdD from Pseudomonas fluorescens FW300-N1B4
Subject, 2195 a.a., Gramicidin S synthase 2 from Azospirillum sp. SherDot2
Score = 822 bits (2122), Expect = 0.0
Identities = 516/1103 (46%), Positives = 667/1103 (60%), Gaps = 63/1103 (5%)
Query: 52 LSYAQQRMWFLWQLDPQSAAYNLPMAVRLSGALQTEALERAFSLLVERHECLRTTFGQEG 111
LS Q+R+WFLW+LDP S AY + A+RL G L+ E+L RAF+L+ RHE LRT F + G
Sbjct: 1126 LSSTQRRLWFLWRLDPVSTAYTISTALRLRGRLEPESLRRAFALVSGRHETLRTRFVERG 1185
Query: 112 ERAFQRVAEPR--DLTLAINDLSALPEERRWPQAQQHMMAEATQAFDLQQGPLLSLRLLR 169
Q + D T+ + + L + R + EA + FDL++GPLL LRL R
Sbjct: 1186 GEPRQVIDADAAVDWTVETLEDAGLLDGR--------LRGEAARPFDLERGPLLRLRLFR 1237
Query: 170 LAEQE-HVLLLTLHHIIADGWSMNILIDEFMRTYDGLVAGRQPTLPALTVHYRDYALWQR 228
L + + H L L +HHII+DGWSMN+L+DE R Y L AG LP L + Y DYA WQ
Sbjct: 1238 LPDGDGHALSLAMHHIISDGWSMNVLVDEIARAYALLSAGLPAALPPLPLQYADYAAWQE 1297
Query: 229 SWLEAGERERQLDYWRTQLGDTQLGEEPPILELPTDRAYPAQSSHQGARLEKVIDGALRQ 288
W+E+ E RQLDYW+ +LG Q P L+LP DR P SH+GA +E +D +L
Sbjct: 1298 RWMESAEARRQLDYWQGRLGGEQ-----PALDLPADRPRPPMQSHRGAAVEFELDASLVA 1352
Query: 289 DLKTLAQRQGVTLFVVLLAAFKTLLHRYSGQTDIRVGGLIANRTRSETEGLIGFFVNTQI 348
L + + QG +LF+VLLAAF LLHR+SGQ D+R+G ANR R E EGL+GFF NTQ+
Sbjct: 1353 GLAAVGREQGASLFMVLLAAFAALLHRHSGQRDLRIGVPTANRGRVELEGLVGFFANTQV 1412
Query: 349 LRSEVTPQTRFSDLLQSLRQAALGAQAHQELPFDALIEALQPARSQSHNPLFQVMFNHQP 408
LR E + F L +R L AQ +QELPFDAL+EALQP RS NPLFQVM +H
Sbjct: 1413 LRIEPDGRLPFDRFLALVRDEVLAAQGNQELPFDALVEALQPDRSLDRNPLFQVMASHSR 1472
Query: 409 LVTDLQDVRLDCGLQVGYLSEQQLAGSGRQHAATSDLMLDTREEGE-QLFAAFTYATDLF 467
+D +R GL + +L HAA DL L + E+ + L A YATDLF
Sbjct: 1473 PRSDA--LRRLPGLDIA--EHPRL-----HHAAQFDLSLHSEEQADGSLRATLIYATDLF 1523
Query: 468 DEQTIAALAEHWHNVLVSVCRDPQQPLGEVSMLGTDERERLIQPVANPALRPGMPQLFEA 527
DE T+ H +L V + P LG + +L + ++ ++PA P +P+L
Sbjct: 1524 DEDTVQRFRSHLERILHGVAQAPTVTLGYLPILDAADWPDVLPRASHPA-GPLVPELISE 1582
Query: 528 QAARTPDTTAVILAGDQSPSLSYAELNARSNRLAHQLRAKGVGPDVLVGVALGRSLELAV 587
QA AV G +LSYAEL A++NRLAH+L+A GVGP+V VGVA RSLEL V
Sbjct: 1583 QAGLHGGCPAVSFGG---RTLSYAELEAQANRLAHRLQALGVGPEVTVGVAAERSLELVV 1639
Query: 588 ALLAVLKAGGAYVPLDPHTPAERLRHVLDDSGLKLVLTESPLLSSLPA---LDGIDCLCL 644
LLAV+KAGGAY+PLDP P RL + D G+ L+LT+S L L + + L L
Sbjct: 1640 GLLAVMKAGGAYLPLDPELPPARLAAMAADGGIALLLTQSHLAGRLGGEVLPEAVRLLLL 1699
Query: 645 DQLPDSDAANQDNLQVT-----VDPQNLAYVIYTSGSTGRPKGVAVSHGALSEFIARAID 699
D D+DA N L T + P+NLAY+IYTSGSTG PKG SHGAL +A
Sbjct: 1700 D-AEDTDAENIGGLPDTPPAAGLRPENLAYLIYTSGSTGTPKGAGNSHGALLNRLAWMQK 1758
Query: 700 YSDLREGDRVLQFATSSFDGFVEQFFPPLCQGA-AVVLRDARLWDSATLHQVVVEQGI-T 757
L G+RVLQ FD V +FF PL GA VV D+A L ++ EQGI T
Sbjct: 1759 AYRLSPGERVLQKTPFGFDVSVWEFFWPLMVGAHLVVAAPGEHRDAARLVALIREQGIDT 1818
Query: 758 LADLPAAYWYSVVQDYAANPPV-HFGALRQIHVGGEAM-AVDGLRLWQRAGLGHVRLLNT 815
L +P S++Q + P V H +LR++ GEA+ A RL+ R L V L N
Sbjct: 1819 LHFVP-----SMLQAFLEEPGVEHCTSLRRVVCSGEALPAALQDRLFAR--LPQVGLYNL 1871
Query: 816 YGPTEATVVSTIHDCSTLTAEAVSWRGIPIGHGLEQRRLYVLDDDLNLLPQGAVGELYIG 875
YGPTEA + + C E + G+PIG ++ RL+VLD+ LN LP GA+GELYI
Sbjct: 1872 YGPTEAAIDVSHWTCR--AGEGGAGGGVPIGVAIDNLRLHVLDECLNPLPAGAIGELYIA 1929
Query: 876 GPGLARGYHRQPTLSAQRFIADPF-AVGERLYRTGDRARLRDDGAVEYIGRVDHQVKIRG 934
G GLARGYHR+ L+A+RF+ADPF A G R+YRTGD AR R DG +EY+GR+DHQVKIRG
Sbjct: 1930 GAGLARGYHRRAGLTAERFVADPFCADGGRMYRTGDLARQRGDGVIEYVGRIDHQVKIRG 1989
Query: 935 FRIELGEIESRLQQCPGIREAVVLALPLIGGTQLVAYLVVDQSVLGSAAEQVILRQQIRA 994
RIELGEIE+ L+ P +R+AVV+A +GG +LV Y+ D + AE L +++R
Sbjct: 1990 LRIELGEIEAVLRGHPAVRDAVVVARDGVGGKRLVGYVAADAN-----AE---LPRRLRE 2041
Query: 995 SLQKNLPDYMVPGHLLLLPRLPLTPSGKLDRKALPIPDPSQLQSAYRAPQTDTEQALAQI 1054
L + LPDYMVP HL++L RLPLTP+GKLDRKALP P P + + P T TE +A+I
Sbjct: 2042 HLGRALPDYMVPSHLVVLERLPLTPNGKLDRKALPEPAPDAVVE-HVPPSTATEHDVAEI 2100
Query: 1055 WIEVLQVPRVGVDDHFFELGGHSLLAAQVIARIKSQLGVVLPLRSLFETPLLGDLALEL- 1113
W VL V RVG D+FF LGGHSLLAA+V AR++ +L V LPLR+LFE P L +LA +
Sbjct: 2101 WRSVLGVERVGAADNFFALGGHSLLAARVAARLRERLEVDLPLRTLFEAPTLAELAARID 2160
Query: 1114 AALAGGASDNDWSDMDQFMSSLE 1136
A GA++ + MD ++ LE
Sbjct: 2161 REKADGAAEEEIGRMDALLADLE 2183
Score = 696 bits (1796), Expect = 0.0
Identities = 457/1102 (41%), Positives = 609/1102 (55%), Gaps = 51/1102 (4%)
Query: 16 LPQDKRRLFLVGMAREGIDFAQLPMTSCVGVDERDGLSYAQQRMWFLWQLDPQSAAYNLP 75
L + +RR +A +GID + LSYAQQR+WFLW++D AAYN+P
Sbjct: 17 LSRSQRRALAAVLAAKGIDIHTRFPIPRADRSQPLPLSYAQQRLWFLWRMDSGGAAYNIP 76
Query: 76 MAVRLSGALQTEALERAFSLLVERHECLRTTFGQEGERAFQRVAEPRDLTLAINDLSALP 135
A+R++G L LE F+ L +RHE LRT F + Q + LA DLSAL
Sbjct: 77 GAIRVTGPLDPALLEAVFAHLADRHEALRTIFAERDGHPVQIIHPRLTPVLASIDLSALA 136
Query: 136 EERRWPQAQQHMMAEATQAFDLQQGPLLSLRLLRLAEQEHVLLLTLHHIIADGWSMNILI 195
R +A++ EA FDL GPL+ L L+RLA +EH+LL+TLHHI+ADGWS+ +
Sbjct: 137 PADREIRARELARVEALTPFDLGNGPLMRLTLVRLAAEEHLLLVTLHHIVADGWSVERFL 196
Query: 196 DEFMRTYDGLVAGRQPTLPALTVHYRDYALWQRSWLEAGERERQLDYWRTQLGDTQLGEE 255
EF R+YD L AGRQP LPAL + Y DYA WQR WLEAGER+RQL YWR +LG
Sbjct: 197 AEFARSYDALRAGRQPDLPALPIQYADYAQWQRDWLEAGERDRQLAYWRDRLGTGH---- 252
Query: 256 PPILELPTDRAYPAQSSHQGARLEKVIDGALRQDLKTLAQRQGVTLFVVLLAAFKTLLHR 315
P+L LP DR PA G + + +DLK LAQ +GVT FV+LLAAFK LL +
Sbjct: 253 -PVLPLPLDRPRPAVLGAHGGTVAFRLGAERSRDLKALAQARGVTPFVLLLAAFKLLLMK 311
Query: 316 YSGQTDIRVGGLIANRTRSETEGLIGFFVNTQILRSEVTPQTRFSDLLQSLRQAALGAQA 375
+SG+TD+RVG ANR R ETEG++GFFVNT +LRS + + F LL LR AL AQA
Sbjct: 312 HSGETDLRVGVPFANRNRIETEGVVGFFVNTLVLRSGLNSRESFGTLLARLRDTALEAQA 371
Query: 376 HQELPFDALIEALQPARSQSHNPLFQVMFNHQPLVTDLQDVRLDCGLQVGYLSEQQLAGS 435
HQ+LPF+ L+EALQP RS SHNPLFQV FN+ D + GL++ + L
Sbjct: 372 HQDLPFEQLVEALQPERSLSHNPLFQVKFNYG---FDTSTLPAPEGLRLAPEPNEFLG-- 426
Query: 436 GRQHAATSDLMLDTREEGEQLFAAFTYATDLFDEQTIAALAEHWHNVLVSVCRDPQQPLG 495
A DL LD + ++L + TYA DLF+ ++ L + +L +V R P PL
Sbjct: 427 -----AHFDLALDIADAPDELHGSMTYARDLFEAASVEGLVADYCGLLDAVLRQPDAPLW 481
Query: 496 EVSMLGTDERERLIQPVANPALRPGMPQLFEAQAARTPDTTAVILAGDQSPSLSYAELNA 555
+ G+ +PA PG+ +L+ A+ P+ AV G+++ L+ L+
Sbjct: 482 RLRPSGSAPAGES-GGWRDPA--PGVLELWNARVEADPEAVAVC-GGERT--LTVRALDG 535
Query: 556 RSNRLAHQLRAKGVGPDVLVGVALGRSLELAVALLAVLKAGGAYVPLDPHTPAERLRHVL 615
+NRLA+ LR G+GP V + RS L LL V+KAG AYVPLDP PAERLR +
Sbjct: 536 LANRLANALREAGIGPGDRVLLGFERSCGLIAGLLGVMKAGAAYVPLDPSQPAERLRRLA 595
Query: 616 DDSGLKLVLTESPLLSSLPALDGIDCLCLDQLPDSDAANQDNLQVTVDPQNL-AYVIYTS 674
SG + + L++ A G+ CL LD A+ D V L AYVIYTS
Sbjct: 596 LSSGARCTVAAGATLAAAGAT-GLSCLDLDG--PHVASQPDGFDGPVPAGALPAYVIYTS 652
Query: 675 GSTGRPKGVAVSHGALSEFIARAIDYSDLREGDRVLQFATSSFDGFVEQFFPPLCQGAAV 734
GSTG PKGV VSHGAL ++ ++ + +G + +T + D F LC G A+
Sbjct: 653 GSTGEPKGVVVSHGALGSYLRGVLERLAVPKGTSMAMVSTVAADLGHTVLFGALCHGGAL 712
Query: 735 VLRD-ARLWDSATLHQVVVEQGITLADLPAAYWYSVVQDYAANPPVHFGALRQIHVGGEA 793
L D A D + G + + ++ ++ A + L +GGEA
Sbjct: 713 HLADDATARDPDRFAAWMAGCGAGVLKIVPSHLRGLLHAARAADVLPRDLLV---LGGEA 769
Query: 794 MAVDGLRLWQRAGLGHVRLLNTYGPTEATVVSTIHDCSTLTAEAVSWRGIPIGHGLEQRR 853
+ +R G +R+LN YGPTE TV H+ IP+G L R
Sbjct: 770 CDGGLVERLRRLRPG-LRVLNHYGPTETTVGVLTHEVPPAFPAV-----IPLGSPLANVR 823
Query: 854 LYVLDDDLNLLPQGAVGELYIGGPGLARGYHRQPTLSAQRFIADPFA--VGERLYRTGDR 911
VLD DL + GA GELY+GG LA GY QP ++A RF+ DP G+RLYRTGDR
Sbjct: 824 ACVLDPDLEPVLAGAAGELYVGGDSLADGYLGQPAVTAARFVPDPQPRRPGDRLYRTGDR 883
Query: 912 ARLRDDGAVEYIGRVDHQVKIRGFRIELGEIESRLQQCPGIREAVVLALPLIGGT---QL 968
RLR DG +E++GR+D QVKIRG R+E GE+ L+ PG+ + +V+A + G QL
Sbjct: 884 VRLRRDGLLEFVGRLDDQVKIRGHRVEPGEVARVLKSLPGLADVLVIAGTAVHGPAAGQL 943
Query: 969 VAYLVVDQSVLGSAAEQVILRQQIRASLQKNLPDYMVPGHLLLLPRLPLTPSGKLDRKAL 1028
+AY V AA +R + LPD+MVP H L+L RLPLT +GK DRKAL
Sbjct: 944 IAYCVPSADAPDIAA--------LREAAAGLLPDHMVPAHWLVLDRLPLTANGKPDRKAL 995
Query: 1029 PIPDPSQLQSAYRAPQTDTEQALAQIWIEVLQVPRVGVDDHFFELGGHSLLAAQVIARIK 1088
P+ P+ + A + T+TEQ LAQIW EVL+ V FF +GG S+L+ Q+IAR +
Sbjct: 996 PV--PAAAEPASQTAMTETEQRLAQIWAEVLKRETVDAGASFFAMGGDSILSLQLIARAR 1053
Query: 1089 SQLGVVLPLRSLFETPLLGDLA 1110
Q G+ + LFE + LA
Sbjct: 1054 KQ-GLKFTPKQLFEAQSIRALA 1074