Pairwise Alignments

Query, 342 a.a., Flagellar motor rotation protein MotB from Pseudomonas fluorescens FW300-N1B4

Subject, 357 a.a., Flagellar motor rotation protein MotB from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  238 bits (608), Expect = 1e-67
 Identities = 140/326 (42%), Positives = 193/326 (59%), Gaps = 18/326 (5%)

Query: 5   QPIIIKRVKKYAGGH--HGGSWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFKD 62
           QPIIIKR+KK  GGH  HGG+WKIA+ADF TAMMAFFL++WLL +    +   IA YF+ 
Sbjct: 9   QPIIIKRIKK--GGHAAHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIASYFQS 66

Query: 63  PVGFSESGTPYIIDLGGSPTLAP------ENTLNPEVKSQPQPDKVTIDSEQVEGMAEQV 116
           PV  S  G P     G S ++ P        +       + +     I ++     + + 
Sbjct: 67  PVKVSLMGGP---GTGNSSSILPGGGRDLSKSFGQMDSGEAERAAKLIGAQMARADSMRR 123

Query: 117 EKERLELLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIVDAENRPMFDSGSARLKP 176
           +  R++ L +++   +E+NP+L +F  QI  E T DGL IQIVD +NRPMFD+GSA +KP
Sbjct: 124 DAARIDALERKITTLIEKNPKLSEFGSQIQLEKTLDGLHIQIVDQQNRPMFDTGSALVKP 183

Query: 177 YFEDILLAMADTIKAVPNKISISGHTDAKPY-SGTGDFGNWELSANRANAARRALIAGSY 235
           Y  DIL  +   +  V N+I+++GHTDA PY SG   + NWELSA+RANA+RR L+AG  
Sbjct: 184 YMRDILREIGAALGDVENRIALAGHTDATPYGSGERGYSNWELSADRANASRRELVAGGL 243

Query: 236 PDAQVARVVGYASSALFDRENPFNPVNRRIDIIVLTKKAQRAIEGSQGAEPAPVPTQGQG 295
           P  ++ RV G ASS L   + P +P+NRRI I+V+T++A+  +     + P PV    + 
Sbjct: 244 PQDKLRRVEGLASSRLLREDLPTDPINRRISIVVMTQEAEDRL--LPRSSPRPVMPMLEP 301

Query: 296 GPGEVP--APTADPNALPADKEPLPA 319
            P  VP  A T  P A PA   P PA
Sbjct: 302 APPPVPTAAATRAPAARPAAAHPAPA 327