Pairwise Alignments

Query, 249 a.a., Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) from Pseudomonas fluorescens GW456-L13

Subject, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  198 bits (504), Expect = 8e-56
 Identities = 110/255 (43%), Positives = 156/255 (61%), Gaps = 11/255 (4%)

Query: 6   KVFLAAAVTLAFSAGAMAE-----TLKMGIEAAYPPFNNKDASGNVVGFDKEIGDALCAK 60
           K +L A   +A +   + +     T++ GIE AYPPF+  +A G++ GFD ++ +ALCA+
Sbjct: 4   KKWLVATALIATTISGVTQAKEWKTVRFGIEGAYPPFSWTEADGSLKGFDVDMANALCAE 63

Query: 61  MKVECTVVTSDWDGIIPALNAKKFDFLISSMSITDERKQAVDFTDPYYSNKLQFIAKKDI 120
           M+VEC +V  DWDGIIP+L A+K+D +I++MSIT+ERK+ VDFT  Y     +FIAKK  
Sbjct: 64  MQVECKIVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGKYAQIPNKFIAKKGA 123

Query: 121 DFKTDKAALKGKIIGAQRATLAGTFLEDNYGDDITIKLYDTQENAYLDLTSGRLDGILAD 180
           D    K  LKG  IG QRAT    ++ DNYGD + I  Y + + AYLDL +GR+  +L D
Sbjct: 124 DLAFTKEGLKGVKIGVQRATTHDKYITDNYGDTVDIVRYGSFDEAYLDLANGRIAAVLGD 183

Query: 181 KYVNYE-WLKSDAGRSYEFKG----DPVEESDKIGIAVRKKD-PIREKLNTALKEIVADG 234
                E  L    G +YEF G    DP    + +GIAVRK+D  + EKL+ A+  +   G
Sbjct: 184 ASALEEGMLNKPGGDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELTEKLDAAITALREKG 243

Query: 235 TYKKINDKYFPFSIY 249
            Y++I  KYF + +Y
Sbjct: 244 IYQQIQAKYFKYDVY 258