Pairwise Alignments

Query, 612 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

Subject, 629 a.a., Transcriptional activator of acetoin/glycerol metabolism from Pseudomonas stutzeri RCH2

 Score =  322 bits (824), Expect = 4e-92
 Identities = 223/628 (35%), Positives = 327/628 (52%), Gaps = 43/628 (6%)

Query: 2   AAPASPLSHDAIIQDSWSRCRAFGLSHQSTPAFDPLPAAGIAQLLESQHS----LVQTTH 57
           AA   P +  AI + SW RC      HQ  P     P       L         ++   H
Sbjct: 20  AASQGPAADPAIAR-SWRRCLE---QHQLDPTSPRAPCVIERPRLNEHRDRLDRVIAVAH 75

Query: 58  QEVLPYYENILSNSNCLIMLADHQGQVLTSWGTQRFIEPKLARGFSAGASWMERCTGTNA 117
            ++   ++  L +S   ++L D  G V+ S   Q         G   GA W E   GTN 
Sbjct: 76  WQMNSLHQQ-LGSSGHAVLLTDASGVVIDSVADQAERAEFQRAGLWLGAVWNEATEGTNG 134

Query: 118 IGTALACEQAVHIEHDEHFLKANRFMTGSAAPIFDTERKVIAVLDVSSD----SYLPPSH 173
           +G  L   QA+ I  DEHF   +  +T SA+P+FD E  ++AVL+VSS     S     H
Sbjct: 135 VGLCLLERQALTIRRDEHFRGRHAALTCSASPVFDAEGGLLAVLNVSSAREDLSRQRRFH 194

Query: 174 TLGMVKMMSQTVENRLILNLFHGQHFQLTFNTGLNNLDSQWAGLLIFDETGQVLSANRRA 233
           T+ +  + ++ +E+   L    G +  L F+     +     GLL FD  G++ + N  A
Sbjct: 195 TMALTNLSAKLIESCFFLQHCEGDYL-LRFHAQPEYIGLLSEGLLAFDGDGRITTINETA 253

Query: 234 DNLLGI---SLSRVSVESLFKVSLLELLNQPEGLP---FSLQASGRNRFQCLLKRPKQVP 287
            NLL     +L    +E++  V L +LL +    P   + L      R  C L+ P    
Sbjct: 254 LNLLASGREALLGQPLETILDVRLEQLLQRARPQPGTCWPLHTHDGQRLYCQLRGP---- 309

Query: 288 IQPRVFAEPAVTAPTPAAISLNTLHFGDIRVEKAVRQAERLLEKDIPLLIHGETGVGKEV 347
            Q RV   P    P  AA  +  L   D  +     +A ++LE+D+P+L+ GETG GKE 
Sbjct: 310 -QMRVVVAP----PKEAAAQVGGLCLLDPSMRTDFSRALKVLERDVPVLLQGETGTGKEA 364

Query: 348 FVKALHQASSRSKQAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGT 407
           F  ALH+ASSR+ + F+A+NCAAIP  L+ESELFGY  G+FTGA ++G +G + +A+ G 
Sbjct: 365 FASALHRASSRAGRPFVALNCAAIPETLIESELFGYRGGSFTGARREGMVGKLEQANGGI 424

Query: 408 LFLDEIGDMPLPTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRSLREQVQLGRFRE 467
           LFLDEIGDMPL  Q RLLRVL+ER V P+G++    +++R+ISA++  LR  V  G FRE
Sbjct: 425 LFLDEIGDMPLALQTRLLRVLEERKVTPLGAAAPAELNIRLISASHHDLRALVAGGAFRE 484

Query: 468 DLYYRIGGLTLELPPLRERSDKEALFKRLWEQHREPSQWAGLSREVLELFERHPWPGNLR 527
           DLYYR+GGL + LPPLRERSDK  L   L  +  +  +   L     +    + WPGN+R
Sbjct: 485 DLYYRLGGLMVALPPLRERSDKAELLDHLLAEEAQ-GESISLDPAARQALLAYRWPGNVR 543

Query: 528 QVSSVMQVALAMAEEQPIRPEH----LPDDF-FVDLEMEPVETPEPLTVDLNDVEDLNRQ 582
           Q+ ++++  +A++E+  I  +     LP +    D   +P+++ E         E L   
Sbjct: 544 QMRNLLRTLVALSEQGRIAVDEVLAVLPAEIGEADAMRDPLQSAER--------EALLSV 595

Query: 583 LQAAGGNISYLARRLGVSRNTLYKRLRQ 610
           L+     +S +A  LG+SRNTLY++LR+
Sbjct: 596 LRERHWQVSRVAEELGISRNTLYRKLRK 623