Pairwise Alignments

Query, 612 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

Subject, 643 a.a., Transcriptional activator of acetoin/glycerol metabolism from Pseudomonas stutzeri RCH2

 Score =  310 bits (794), Expect = 1e-88
 Identities = 207/629 (32%), Positives = 328/629 (52%), Gaps = 35/629 (5%)

Query: 3   APASPLSHDAIIQDSWSRC-RAFGLSHQSTPAFDPLPAAGIAQLLESQHSLVQTTHQEVL 61
           AP  P   D II  SW RC   +GL          +P   + +  +    L+      V 
Sbjct: 20  APHLPGDRDPIIARSWHRCVHDYGLDPARPAEARFVPRQVLREHQDQADELINVARAGVE 79

Query: 62  PYYENILSNSNCLIMLADHQGQVLTSWGTQRFIEPKLARGFSAGASWMERCTGTNAIGTA 121
             Y  I +    +I+L D++G  +   G     +     G   G+ W E   GT A+GT 
Sbjct: 80  QLYRQI-AELGYVILLTDNRGIAVQFLGDPADEKAHRKTGLFLGSDWGEDHAGTCAVGTC 138

Query: 122 LACEQAVHIEHDEHFLKANRFMTGSAAPIFDTERKVIAVLDVSSDSYLPPSH-----TLG 176
           +  +QA+     +HF   +  +T +A P+F+   +++AVLD+S+  + PP+       L 
Sbjct: 139 IKEQQALTCHQHDHFSVWHTNLTCTAVPMFNPHGQLLAVLDISA-LHSPPTKDSQTFALQ 197

Query: 177 MVKMMSQTVENRLILNLFHGQHFQLTFNTGLNNLDSQWAGLLIFDETGQVLSANRRADNL 236
           +VK  ++ +E+   + ++  +   L F+     +      LL   + G++L+ N  A  L
Sbjct: 198 LVKQYARMIEDAYFMRVYRERPI-LCFDGSREFVVINRRYLLALGDDGELLAGNTAARGL 256

Query: 237 LGI----------SLSRVSVESLFKVSLLELLNQPEGLPFSLQASGRNR----FQCLLKR 282
           L            +L++  ++ LF   L ++L+ P      ++A   +R    F  L++ 
Sbjct: 257 LAEHGLLMPGPFGTLAQARIDQLFDCELSDVLSIPYASHDQVRAFRTHRHQLFFAALMEP 316

Query: 283 PKQVPIQPRVFAEPAVTAPTPAAISLNTLHFGDIRVEKAVRQAERLLEKDIPLLIHGETG 342
            ++VP       EP   +      +L+ L   D  + K + +A RL  + + +L++GETG
Sbjct: 317 RRRVP-------EPVERSAPGGHSALDALADDDPVMRKMLARARRLCSEPLNVLLNGETG 369

Query: 343 VGKEVFVKALHQASSRSKQAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRK 402
            GKE   KALH++  R  + F+A+NC A+P  L+ESELFGY  G FTGA  KG  GLI++
Sbjct: 370 TGKERLAKALHESGCRRSKPFVAINCGAMPESLIESELFGYAPGTFTGARSKGMRGLIQQ 429

Query: 403 ADKGTLFLDEIGDMPLPTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRSLREQVQL 462
           AD GTLFLDEIGDMPL  Q RLLRVL E+ V P+G+ +   VD+R+++A++R LR+ V+ 
Sbjct: 430 ADGGTLFLDEIGDMPLHLQTRLLRVLAEQEVMPLGADKPVKVDIRVVAASHRDLRQMVES 489

Query: 463 GRFREDLYYRIGGLTLELPPLRERSDKEALFKRLWEQHRE--PSQWAGLSREVLELFERH 520
           G FREDL+YR+ G +L+LPPLRER+DK  L +R++ +  E  P     L  + +     +
Sbjct: 490 GAFREDLFYRLNGASLKLPPLRERADKGFLIERVFAELAEGRPGN-PHLRGDAMSALLAY 548

Query: 521 PWPGNLRQVSSVMQVALAMAEEQPIRPEHLPDDFFVDLEMEPVETPEPLTVDLNDVEDLN 580
           PWPGN+R++ +V+Q ALA  E   I  + LPD+    +     ++      +      L 
Sbjct: 549 PWPGNIRELRNVLQYALATCEGDEITVQDLPDECLPPILARCRQS--ATAAEPESAAALR 606

Query: 581 RQLQAAGGNISYLARRLGVSRNTLYKRLR 609
             L+    N+S  AR LGVSR T+Y+R+R
Sbjct: 607 ETLRRHRWNVSAAARELGVSRPTMYRRMR 635