Pairwise Alignments

Query, 612 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

Subject, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  369 bits (948), Expect = e-106
 Identities = 229/606 (37%), Positives = 347/606 (57%), Gaps = 35/606 (5%)

Query: 8   LSHDAIIQDSWSRCRAFGLSHQSTPAFDPLPAAGIAQLLESQHSLVQTTHQEVLPYYENI 67
           LSH   + +SW R    GL+ QS      L    + +  +    L+ T  +  LP +  +
Sbjct: 7   LSHVNWLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQL 66

Query: 68  LSNSNCLIMLADHQGQVLTSWGTQRFIEPKLARGFSAGASWMERCTGTNAIGTALACEQA 127
            ++S+  ++L D  G ++ SWG  RF E       S+GA W E   GTNAIGTAL  ++ 
Sbjct: 67  FAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKP 126

Query: 128 VHIEHDEHFLKANRFMTGSAAPIFDTERKVIAVLDVSSDSYLPPSHTLGMVKMMSQTVEN 187
           + +  ++HF++ + F++ SA+PIFD   ++I VLD++S+       T  +V+ M Q VEN
Sbjct: 127 ISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMVQLVEN 186

Query: 188 RLILNLFHGQHFQLTFNTGLNNLDSQWAGLLIFDETGQVLSANRRADNLLGISLSRVSVE 247
           +L+  + HG H ++      + L S W G++I DE+GQ+L+ N+ A  LL  +  RV  +
Sbjct: 187 QLLNQIPHG-HVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLL--AQGRVIGQ 243

Query: 248 SLFKVSLLELLNQPEGLPFSLQASGRNRFQCLLKRPKQVPIQPRVFAEPAVTAPTPAAIS 307
           S+ +V     L +P+     +  +               P+  +   +    A TPA+  
Sbjct: 244 SVEQV-----LPRPQTHASFIYTT--------------TPLHSK---QHRTRALTPAS-- 279

Query: 308 LNTLHFGDIRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRSKQAFIAVN 367
              LHFGD  VE+  +QA R+++KDI LLI G+TGVGK  FVKALH+ S R     +AVN
Sbjct: 280 --DLHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVN 337

Query: 368 CAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPLPTQARLLRV 427
           C A+  ELVE+ELFGY  GAFTGA+ KG  G +R ADKG LFLDEI D+PL  Q+RLL V
Sbjct: 338 CGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHV 397

Query: 428 LQERCVQPVGSSELFPVDLRIISATNRSLREQVQLGRFREDLYYRIGGLTLELPPLRERS 487
           LQ++ V PVGS+    VD++II+AT+++L + V  G FR+DLYYR+  L +ELP  ++R 
Sbjct: 398 LQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQ 457

Query: 488 DKEALFKRLWEQHREPSQWAGLSREVLELFERHPWPGNLRQVSSVMQVALAMAE-EQPIR 546
           D++AL   +  ++ +  Q   +  ++++    + WPGNLR++ S+++VA  MAE E  + 
Sbjct: 458 DRQALIHHIHRRYSDAGQ--QICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLT 515

Query: 547 PEHLPDDFFVDL-EMEPVETPEPLTVDLNDVED--LNRQLQAAGGNISYLARRLGVSRNT 603
             HLP      L    P  T +    D+    +  L +  QA  GNIS  +R LG+SRNT
Sbjct: 516 FNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNT 575

Query: 604 LYKRLR 609
           +Y++L+
Sbjct: 576 IYRKLK 581