Pairwise Alignments

Query, 612 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

Subject, 629 a.a., sigma-54-dependent Fis family transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  313 bits (803), Expect = 1e-89
 Identities = 204/603 (33%), Positives = 307/603 (50%), Gaps = 17/603 (2%)

Query: 12  AIIQDSWSRCRAFGLSHQSTPAFDPLPAAGIAQLLESQHSLVQTTHQEVLPYYENILSNS 71
           A I  SW RC   GL    +P  +P  A  + +  E    L +    E L   +     +
Sbjct: 30  APILRSWQRCAGQGLDASRSPLVEPPTARELREFQERHDRLGRLARPE-LNALQGDARLT 88

Query: 72  NCLIMLADHQGQVLTSWGTQRFIEPKLARGFSAGASWMERCTGTNAIGTALACEQAVHIE 131
             +++L D  G VL   G+  F           G SW E  TGTNAIGTAL   Q + + 
Sbjct: 89  GSVVILTDAAGVVLDMIGSDEFAGRAAQVALRPGVSWSEADTGTNAIGTALVERQPIAVH 148

Query: 132 HDEHFLKANRFMTGSAAPIFDTERKVIAVLDVSSDSYLPPSHTLGMVKMMSQTVENRLIL 191
             EHF + +R +  +AAP+ D    V   LD++  + +   H LG++++ ++ +E+R   
Sbjct: 149 GAEHFFERHRILACAAAPLIDPRGVVAGALDMTGPAAIRHVHALGLMRLAAEQIEHRFFT 208

Query: 192 NLFHGQHFQLTFNTGLNNLDSQWAGLLIFDETGQVLSANRRADNLLGISLSRVSVESLFK 251
             F      L  +T    L +   G+L F + G ++ ANR   +L+ +    + +  L  
Sbjct: 209 EGFE-HCTMLRLHTDRALLGTPREGVLAFAD-GVLVGANRHGLDLMNLDWPALDLARL-- 264

Query: 252 VSLLELLNQPEGLPFSLQASGRNRFQCLLKRPKQVPIQPRVFAEPAVTAPTPAAISLNTL 311
            +LL  +   + +       G   +  L+   ++ P  P      ++ A  PAA +    
Sbjct: 265 ETLLPGVRPSDQIQMLRGPRGTRLWGRLVDPLRRSPRAPAA----SMPAAVPAAPAGEVE 320

Query: 312 HFGDIRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRSKQAFIAVNCAAI 371
              D  +   + +  RL+E  IP+L+ GETG GK+VF + +H  S+R  + F+ VNCAA+
Sbjct: 321 PILDAEMMAQLSRTVRLVEAGIPVLLLGETGSGKDVFARRVHAESARRNKPFVPVNCAAL 380

Query: 372 PAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPLPTQARLLRVLQER 431
           P  L+ESELFGYE GAFTGA ++G+ GL+R+AD G LFLDEIGDMPL  Q+RLLRVLQ++
Sbjct: 381 PEGLIESELFGYEAGAFTGARRQGAPGLLRQADGGVLFLDEIGDMPLSLQSRLLRVLQDK 440

Query: 432 CVQPVGSSELFPVDLRIISATNRSLREQVQLGRFREDLYYRIGGLTLELPPLRERSDKEA 491
            + P+G     PVD  +I AT++ L   +  G FR+DLY+RI    +E PP+R   D+ A
Sbjct: 441 QISPLGGGRPVPVDFALICATHQPLGTLLAAGAFRQDLYFRIAQYVVERPPVRHHPDRLA 500

Query: 492 LFKRLWEQHREPSQWAGLSREVLELFERHPWPGNLRQVSSVMQVALAMAEE-QPIRPEHL 550
           L + LW Q         LS EV  +   + WPGN RQ+   ++  L + E   P+    L
Sbjct: 501 LVRTLWRQLGGEDAGVQLSAEVERVLAAYNWPGNYRQLVGTLRALLVLGEPGHPVEVAAL 560

Query: 551 PDDF-----FVDLEMEPVETPEPLTVDLNDVEDLNRQLQAAGGNISYLARRLGVSRNTLY 605
           P +       V+ ++  +     L      V  L   L A+GGN+S  ARRLG+ R+T Y
Sbjct: 561 PAEITAAAGAVESQVSEMLPGTSLAEQTRSV--LQAALDASGGNVSRAARRLGIDRSTYY 618

Query: 606 KRL 608
           +RL
Sbjct: 619 RRL 621