Pairwise Alignments

Query, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

Subject, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

 Score =  313 bits (801), Expect = 1e-89
 Identities = 194/481 (40%), Positives = 275/481 (57%), Gaps = 31/481 (6%)

Query: 1   MSH-ILIVEDETIIRSALRRLLERNQYEVSEAGSVQEAQERYSIPGFDLIVSDLRLPGAP 59
           M H IL+VED+ I+   +R  L    YEV    S + A E+      D +++D  LPG  
Sbjct: 1   MEHSILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMS 60

Query: 60  GTELIKL----AEGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQTVARILSD 115
           G +L++     A    V++MT Y ++  AV +MK GA  Y+ KP    E+  T+ + L+ 
Sbjct: 61  GHDLLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALAT 120

Query: 116 HQQSAAVQAQPARSASATAAGSGRDDIGIIGHCAPMQDLFGKIRKVAPTDSN-------- 167
            +    +     R A  +   +      +IG    M  L   +R+V   +          
Sbjct: 121 ERMERTLSFYQEREAQKSGLQA------LIGESPVMLTLKHTLRQVLDAERRMASDDLPP 174

Query: 168 VLIQGESGTGKELVARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAG 227
           VLI+GE+GTGKELVARALH    R+K P I  NCA+IP  L+E+ELFGHEKGAFT A   
Sbjct: 175 VLIEGETGTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKER 234

Query: 228 RAGLVEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRD 287
           R GLVEAADGGTLFLDEIGE+ L  QA+LL++L++  IRR+G+V+ +KVD+R+I+AT+ +
Sbjct: 235 RVGLVEAADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCN 294

Query: 288 LKTLAKTGQFREDLYYRLHVIALKLPPLRERGSDVLEIAKAFLARQGERMGSDDLHFSRD 347
           L+ + + G+FR DL++RL +IALK+P L  RG D+L +A+ FLA    R G  +L FS +
Sbjct: 295 LEQMVQQGKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAE 354

Query: 348 AEQAIRHYSWPGNVRELENAIERAAILSESPEIDAELLGIDIELDELDDDFDEPLGSIRG 407
           AE  +  YSWPGNVREL N +E+  +L+ +  + A  L + + L       DEPL     
Sbjct: 355 AESLLLGYSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTL------VDEPLAQQPM 408

Query: 408 IA----NSNEPTEDLSLEDYFQHFVLEHQDH--MTETELARKLGISRKCLWERRQRLGIP 461
            A      +EP    SL D  +  V +  D      T+ AR LG+SR  L  R ++LG+ 
Sbjct: 409 AAMFEMPRHEPEPGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGLT 468

Query: 462 R 462
           R
Sbjct: 469 R 469