Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas stutzeri RCH2

Subject, 314 a.a., tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase from Escherichia coli BL21

 Score =  313 bits (801), Expect = 4e-90
 Identities = 157/309 (50%), Positives = 215/309 (69%), Gaps = 7/309 (2%)

Query: 1   MAQVKRVRRNVNGIILLDKPRGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG 60
           M++ +R  R++NG++LLDKP+G +SN ALQKV+ + NA +AGHTG+LDPLATG+LP+C G
Sbjct: 1   MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60

Query: 61  EATKFSQYLLDADKAYETVMQLGVTTTTADAEGEVLERKPVAVTVEQLEALLPQFRGDIL 120
           EATKFSQYLLD+DK Y  + +LG  T T+DA+G+++E +PV  + EQL A L  FRGDI 
Sbjct: 61  EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120

Query: 121 QVPPMYSALKRDGQPLYKLARAGEVVEREPRSVNIARLELLSLEGDKARLAVSCSKGTYI 180
           Q+P MYSALK  G+ LY+ AR G  V RE R + +  L  +  EG++  L + CSKGTYI
Sbjct: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180

Query: 181 RTLVEDLGHLLGCGAHVAELRRTQAGPFDLSQTVTLETLEQLHSEG------GAEALDAL 234
           RT+++DLG  LGCGAHV  LRR     + + + VTLE L +L  +        AE LD L
Sbjct: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240

Query: 235 LQPVDSGLEHWPLLQLSEHSAYYWLHGQPVRAPEAPKYGMVRV-QDNNGRFIGIGEVSED 293
           L P+DS    +P++ L   S+ Y+ +G PVR   AP  G+VRV +  NG+FIG+GE+ ++
Sbjct: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300

Query: 294 GRIAPRRLI 302
           GR+APRRL+
Sbjct: 301 GRVAPRRLV 309