Pairwise Alignments

Query, 493 a.a., transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication from Pseudomonas stutzeri RCH2

Subject, 493 a.a., transcription termination/antitermination L factor from Pseudomonas putida KT2440

 Score =  851 bits (2199), Expect = 0.0
 Identities = 441/493 (89%), Positives = 468/493 (94%)

Query: 1   MSKEVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDEVDLRVEINRQNGSYETFR 60
           MSKEVLLVVESVSNEKGVP  VIFEALE+ALATATKKR+EDEVDLRVEINR  GSYETFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFR 60

Query: 61  RWTVVDDEHFDDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQKV 120
           RWTVVD+   DDPA +  LD+ ++ +P+AK+GDV EEKIESIEFGRIAAQTAKQVIVQKV
Sbjct: 61  RWTVVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKV 120

Query: 121 REAERAQVVEAYRDRLGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVGAR 180
           REAERAQVV+AYR+R+GEIISGTVKKVTRD+VIVDLGNNAEALLAREDII RETFRVG R
Sbjct: 121 REAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVR 180

Query: 181 VRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKIAV 240
           +RALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVM ASRDPGSRAKIAV
Sbjct: 181 LRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240

Query: 241 RSKDKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQLVINAMAPAEVAAIIV 300
           RSKDKRIDPQGACIGMRGSRVQAVSGE+GGERVDIVLWD+NPAQ VINAM+PAEVAAIIV
Sbjct: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV 300

Query: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDILRN 360
           DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTE DIQAKQQ ETGDILRN
Sbjct: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRN 360

Query: 361 FIDELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLTKA 420
           FI+EL+VDEELAQVLV+EGFTSLEEIAYVP+EEML I+GFDEDIVNELR RAKDRLLTKA
Sbjct: 361 FIEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKA 420

Query: 421 IANEEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQSIDDLLDIDGIDEERA 480
           IA EEKLADA PAEDLL+L+GMDK+LA ELAVRGV+ REDLAEQSIDDLLDIDGIDEERA
Sbjct: 421 IATEEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQSIDDLLDIDGIDEERA 480

Query: 481 GKLIMAARAHWFE 493
           GKLIMAARAHWFE
Sbjct: 481 GKLIMAARAHWFE 493