Pairwise Alignments

Query, 493 a.a., transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication from Pseudomonas stutzeri RCH2

Subject, 496 a.a., transcription termination/antitermination protein NusA from Dickeya dianthicola ME23

 Score =  598 bits (1543), Expect = e-175
 Identities = 308/493 (62%), Positives = 379/493 (76%), Gaps = 3/493 (0%)

Query: 1   MSKEVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDEVDLRVEINRQNGSYETFR 60
           M+KE+L VVE+VSNEK VP   IFEALE ALATATKK+YE E+D+RV I+R+ G ++TFR
Sbjct: 1   MNKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFR 60

Query: 61  RWTVVDDEHFDDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQKV 120
           RW VV++     P  ++ L+ AQ   P   LG   E++IES+ F RI  QTAKQVIVQKV
Sbjct: 61  RWLVVNE--VTQPTREITLEAAQFEEPSMDLGGYIEDQIESVTFDRITTQTAKQVIVQKV 118

Query: 121 REAERAQVVEAYRDRLGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVGAR 180
           REAERA VV+ +R++ GEI++G VKKV RD++ +DLG+NAEA++ RED++ RE FR G R
Sbjct: 119 REAERAMVVDQFREQEGEIVTGVVKKVNRDNISLDLGSNAEAVIGREDMLPRENFRPGDR 178

Query: 181 VRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKIAV 240
           +R +L  +R E RG QL +SR+ P+MLIELFRIEVPEI E +IE+  A+RDPGSRAKIAV
Sbjct: 179 IRGVLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238

Query: 241 RSKDKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQLVINAMAPAEVAAIIV 300
           ++ DKRIDP GAC+GMRG+RVQAVS E+GGER+DIVLWD+NPAQ VINAMAPA+VA+I+V
Sbjct: 239 KTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298

Query: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDILRN 360
           DED H MDIAV   NLAQAIGR GQNVRLASQL+GW LNVMT  D+QAK Q E    +  
Sbjct: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDI 358

Query: 361 FIDELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLTKA 420
           F   LD+DEE A  LVEEGF+SLEE+AYVP+ E+  I+G DE+ +  LR RAK  L T A
Sbjct: 359 FTKHLDIDEEFATALVEEGFSSLEELAYVPIHELQDIDGLDEETIEALRERAKAALTTLA 418

Query: 421 IANEEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQSIDDLLDIDGIDEERA 480
           +ANEE     QPAEDLL L G+ +ELA +LA  GV T EDLAEQ +DDL DI+G+ EE+A
Sbjct: 419 LANEENRGSGQPAEDLLNLSGLSRELAFKLAACGVCTLEDLAEQGVDDLADIEGLGEEQA 478

Query: 481 GKLIMAAR-AHWF 492
           G+LIMAAR   WF
Sbjct: 479 GELIMAARNICWF 491