Pairwise Alignments

Query, 739 a.a., Lhr-like helicases from Pseudomonas stutzeri RCH2

Subject, 816 a.a., ATP-dependent helicase, DEAD box family from Pseudomonas putida KT2440

 Score =  142 bits (359), Expect = 5e-38
 Identities = 186/676 (27%), Positives = 287/676 (42%), Gaps = 103/676 (15%)

Query: 23  WIWTEGWTSLRDAQERAIPALLGADQDVIIAAATAAGKTEAAFLPILTNLLQDTE----K 78
           W    GW     A +R + A +   +  ++ A+T AGKT A +L  L       +     
Sbjct: 11  WFAKRGWKPF--AFQRRVWAAVERGESGLLHASTGAGKTYAVWLAALRAFKPRPQGRHLA 68

Query: 79  PGAVLYISPLKALINDQWDRLARLCDELELP--VIAWHGDISASRKHRFLKSPEGILLIT 136
           P  VL+++P++AL  D    L    DEL+LP  V    GD +++ + R  +    +L+ T
Sbjct: 69  PIQVLWVTPMRALAADTARALQAPLDELQLPWSVGVRSGDTNSAERARQARRLPSVLITT 128

Query: 137 PESLEALFVNKGTSLAGLFANLRYLVVDELHAFIGSERGKQLQSLMHRVETIIDRPLPRV 196
           PESL  L           FA L+ +VVDE H  +G++RG QLQ  + R+       LP  
Sbjct: 129 PESLTLLLTR--AKAREDFATLQLVVVDEWHELLGNKRGVQLQLALARLRHW-HPGLPTW 185

Query: 197 GLSATLGDMTLAAAFLRPNAPHHVSVIESKGSGQILKAQIRGYVESKKALPVQ---PEGD 253
           GLSATLG++  A   L P              G +++ +        KAL V    P+  
Sbjct: 186 GLSATLGNLQHARDVLLPQG------------GLLVQGR------QDKALQVDTLLPKAI 227

Query: 254 DVFS-PDHAIAEHLFQVLR----GSNNLIFPNSRTQVE-WFADNLRRRCEQNGVPNEFWP 307
           + F    H   + L QV       +++L+F N+R Q E W+   L  R +  G+      
Sbjct: 228 ERFPWAGHMGLKMLDQVCHEIDASASSLVFTNTRAQAEIWYQALLEARPDWAGL---IAL 284

Query: 308 HHGSLAKDIREETEKALKAGDRPATAVCTTTLELGVDIGSIKTVVQIGAPPSVASLRQRL 367
           HH SLA+D R+  E++LK G   A  +CT++L+LGVD   ++ V+QIG+   +A L QR 
Sbjct: 285 HHASLARDTRDWVERSLKQGSLKAV-ICTSSLDLGVDFLPVERVLQIGSAKGIARLMQRA 343

Query: 368 GRSGRRPGEAAILRSYCKERQLDDGSPLSDRLRQGLLQSIAMIRLLMQGWFEPPRVHGLH 427
           GRSG  PG  + + +      L+            L+++ A  + L+ G  E      L 
Sbjct: 344 GRSGHAPGRRSRV-TLVPTHSLE------------LVEAAAARQALLAGHIEARFSPRLC 390

Query: 428 LSTLVQQCLSVIAQRGGATAAELWSTLIRSGPFTGVEQGSFL----------SLLRALGE 477
           +  LVQ  +S +A   G    +L + +  +  F  +    +           S L A  +
Sbjct: 391 MDVLVQHLVS-MALGSGFRPEQLLAEVRSTWAFRQLRDSQWQWALDFVCHGGSSLTAYPD 449

Query: 478 RDLITQETSGLLLPGVVGERLI-NHYDFYSAFVSNEEFRLVC-----DGKPLGALPVS-- 529
              + ++  G+    V  ERL   H       VS+   +L        GK LG++  +  
Sbjct: 450 YQRVERQADGVY--RVTSERLARRHRMGIGTIVSDANLQLKYWSKGGGGKTLGSVEEAFI 507

Query: 530 RPLTVDQRIIFAGRRWRVTSVD---------TEAKVVVVRSDPGGAPPS-------FDGL 573
             L     ++FAGR   +  V+         T  K  V R + G  P S        + L
Sbjct: 508 ARLRPGDTLVFAGRVLELVRVENMTAYVRRSTARKAAVARWNGGRMPLSSELADALVEQL 567

Query: 574 GARVHDRVR-QEMRSVLLEADVYPYLDTTAQELLAQARSAFSDLGLAHSSMTESGGKTYL 632
            A  H+R    EMR+      V P L   AQ       S      LA +  +  G   +L
Sbjct: 568 DAAAHERFEGPEMRA------VRPLLALQAQWSALPTTSTL----LAETFKSRQGWHLFL 617

Query: 633 FSWRGDWTNDALAILL 648
           + + G   N  LA L+
Sbjct: 618 YPFAGRMANLGLANLI 633