Pairwise Alignments

Query, 674 a.a., alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data) from Pseudomonas stutzeri RCH2

Subject, 650 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 78.6 bits (192), Expect = 9e-19
 Identities = 101/383 (26%), Positives = 163/383 (42%), Gaps = 41/383 (10%)

Query: 135 LAYGLLGEYLPGDLAHRGYYLDQIVNQLSFGTEGLYGTPTYVSATYIFLFILFGSFLEQA 194
           L +GL+G YL       G +  + +  L    E +YGT        +  F   G  LE++
Sbjct: 74  LIFGLIGIYL-------GLFEPKFLQALP---ERVYGTMNNEVLLAVPFFTFMGLILERS 123

Query: 195 GMIKLFTDFAMGLFGHKLGGPAKVSVVSSALMGTITGSGVANVVTTGQFTIPLMKRFGYR 254
           GM +   D    +FG   GG A   +   AL+   TG   A+V++ G  ++P+M R+GY 
Sbjct: 124 GMAEDLLDTIGQVFGSIRGGLAYAVIFVGALLAATTGVVAASVISMGLISLPIMLRYGYD 183

Query: 255 PAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPALLYFG--SVFWM 312
              A GV A S   +QI+PP +  V  +MA+ +N    ++ + A +P LL     +V+  
Sbjct: 184 RRVASGVIAASGTLAQIIPPSL--VLIVMADQLNRSVGDMYEGAFVPGLLLASLYAVYIF 241

Query: 313 VHLEAKRAGLKGLPKDE---CPSAMAAVKERWYLLIPLVVLVWLLFSGRTP-MFAGTI-G 367
           +          GLP +           +  R    +      +L+  G  P + AG + G
Sbjct: 242 IISSIFPNAAPGLPLEAQTLRDPEQKTLPSRIMGAVAAAGFAFLIARGSLPGLTAGALPG 301

Query: 368 LALTAIVILGSAIIL--KVSNFA--LRIAFWIALGLLCAGFFQL--------GIGVIFGV 415
           +A  A+  +GS ++L   +S  A  L  + +IAL L  AG  +L        G   +   
Sbjct: 302 VANMAVWGIGSFVVLFFIMSGTAKLLTPSLFIALALSIAGAIELMEMSHVKFGADYVVLT 361

Query: 416 IAALVAVCWFIKGGRDTLVICLHALVEGARHAV-----PVGIACALVGVI-IGVVSLT-- 467
           ++A V + + +       V  L  L + A   V     P+ +   ++G I IGV + T  
Sbjct: 362 MSATVGIAFVV--AVINRVFRLKLLSKLAEQVVFVMVPPLALIFLVLGTIFIGVATPTEG 419

Query: 468 GVASTFAGYILAVGENNLFLSLL 490
           G   +    ILA     L   LL
Sbjct: 420 GAMGSLGAVILAFARGRLKFDLL 442



 Score = 25.8 bits (55), Expect = 0.007
 Identities = 63/298 (21%), Positives = 115/298 (38%), Gaps = 54/298 (18%)

Query: 48  VGFLLLLVFLCYPARGNGKPFQP---VAWLLGLAGFATFFYQWY--FEADLIQRSGDMTT 102
           +G  ++L F+     G  K   P   +A  L +AG        +  F AD +     + T
Sbjct: 310 IGSFVVLFFIM---SGTAKLLTPSLFIALALSIAGAIELMEMSHVKFGADYV-----VLT 361

Query: 103 ADMVVGLTLIVLVF----------EAARRVMGIALPIICALFLAYG--LLGEYLPGDLAH 150
               VG+  +V V           + A +V+ + +P +  +FL  G   +G   P +   
Sbjct: 362 MSATVGIAFVVAVINRVFRLKLLSKLAEQVVFVMVPPLALIFLVLGTIFIGVATPTEGGA 421

Query: 151 RGYYLDQIVNQLSFGTE--GLYGTPTYVSA--TYIFLFILFGSFLEQAGMIKLFTDFAMG 206
            G  L  ++   + G     L    TY +A  +   LFIL G+        ++F+    G
Sbjct: 422 MGS-LGAVILAFARGRLKFDLLRQATYSTAKLSAFVLFILLGA--------RVFSLTFYG 472

Query: 207 LFGHKL---------GGPAKVSVVSSALMGTITGSGVANVVTTGQFTIPLM----KRFGY 253
           + GHK          GG     +  +AL+  +  +   +        IPL+     + G 
Sbjct: 473 VDGHKWVEELLVSLPGGQTGFLIAVNALVFVL--AFFLDYFELAFIIIPLLGPAADKMGI 530

Query: 254 RPAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPALLYFGSVFW 311
              + G + A +   S + PP   A+ F+ +    VP+V+     ++  +   G ++W
Sbjct: 531 DLIWFGVMLAVNMQTSFMHPPFGFALFFLRSVAAKVPYVDRVTGKMMQPVT-TGQIYW 587