Pairwise Alignments

Query, 341 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

Subject, 333 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

 Score =  111 bits (277), Expect = 3e-29
 Identities = 82/326 (25%), Positives = 144/326 (44%), Gaps = 6/326 (1%)

Query: 9   VNVFKSLVVAPFAALVLTLSPLIAQAAEPIVIKFAHVVGDDTPKGKGALLFQTLVRERLA 68
           V + ++L VA     +  ++P  AQ     VI+F H+   D P   G   F  L+  +  
Sbjct: 1   VKLLRTLAVAGLC--IGLVAPTWAQQER--VIRFGHLNNADHPVSFGVKRFAELLAAKSG 56

Query: 69  GKVDVEVYPNSTLVGDADEMQALLDNKVQMLAPSLSKFIEYSPKLEVFDLPFLFDDDAAV 128
           GK+ V+ YP S L  +  +  AL     QM AP+ +       +  + D PF  ++ A  
Sbjct: 57  GKMKVQEYPASQLGNEMQQQSALQGGVQQMSAPATTSLAGIVKEFGLVDFPFSVNNFAQA 116

Query: 129 ARFQKREASRDLLRSMAGRGIYGLAYWNNGLKQLS-ANQPLQTPADAAGLAFRIQPSPVL 187
                    + L+  +  +G+  L YW+ G + ++ + +P+  P D  GL  R+ P+PV 
Sbjct: 117 DALLDGPLGQALIAKLPEKGLVALGYWDLGFRNVTNSKRPIAKPEDLEGLKIRVIPNPVF 176

Query: 188 EAQFAAVDAKAVRLPFSEVSKAMQSGTVQGTEGPWSNIRGQNAGLKQSYVTETNHGVLNY 247
              F +  A  V +PF+E+  A++S  V G E P+S I        Q +V+ TNH     
Sbjct: 177 LETFKSFKANPVPMPFAELYGALESKAVDGQENPYSVILSNKFFEVQKFVSATNHVYAAN 236

Query: 248 MLVTNSEFWTSIPFAVRSELENIVLEVTQTVNAEAAAINQREREQILASGNTTLVTLTPA 307
           +++ + +FW S+  A +  +     E        + A  Q+    + A G      ++ A
Sbjct: 237 IVLVSKKFWDSLSAAEQKMMNEAADEARGYQRQVSRAAAQKAIGDLQAKG-AQFNEVSAA 295

Query: 308 QRQAWRVKMQPVWKSFEAHIGADIMR 333
           ++   R   +P    F +   A I++
Sbjct: 296 EQVRMREIAKPAIDKFASQYDAGIVK 321