Pairwise Alignments

Query, 341 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

Subject, 335 a.a., C4-dicarboxylate binding protein from Agrobacterium fabrum C58

 Score =  120 bits (301), Expect = 5e-32
 Identities = 80/299 (26%), Positives = 134/299 (44%), Gaps = 2/299 (0%)

Query: 40  IKFAHVVGDDTPKGKGALLFQTLVRERLAGKVDVEVYPNSTLVGDADEMQALLDNKVQML 99
           I+ ++ +  D P G G    Q  + ++  GK+ +  +    L GD    QAL     + +
Sbjct: 30  IRVSNGINQDHPVGNGIKAMQACLDDKSGGKLKLTAFWGGALGGDLQATQALRSGVQEAV 89

Query: 100 APSLSKFIEYSPKLEVFDLPFLFDDDAAVARFQKREASRDLLRSMAGRGIYGLAYWNNGL 159
             S S  +   P L VFDLPFLF +D              + + +  +G+  LAYW NG 
Sbjct: 90  VTSSSPLVGLIPSLGVFDLPFLFANDKEADAVMDGAFGDMMNKKLEEQGLVNLAYWENGF 149

Query: 160 KQLS-ANQPLQTPADAAGLAFRIQPSPVLEAQFAAVDAKAVRLPFSEVSKAMQSGTVQGT 218
           + LS +   +    D +GL  R+  + +    F  + A A  + F EV  A+++  +   
Sbjct: 150 RNLSNSKHAVNKWEDFSGLKVRVMQNNIFLDTFQNLGANATPMAFGEVFSALETNAIDAQ 209

Query: 219 EGPWSNIRGQNAGLKQSYVTETNHGVLNYMLVTNSEFWTSIPFAVRSELENIVLEVTQTV 278
           E P+  I        Q YVTETNH    ++ + +   + S     ++ L    +      
Sbjct: 210 ENPYVTIDTSKFYEVQKYVTETNHAYTPFLFLFSKPIFDSYTPEEQTALRECAVVGRDEE 269

Query: 279 NAEAAAINQREREQILASGNTTLVTLTPAQRQAWRVKMQPVWKSFEAHIGADIMRAALA 337
                 +NQ+  E+I A+G   + TL+P ++   R K   V++  +A IGAD++ A LA
Sbjct: 270 RKVIRELNQKSLEKIKAAG-LEVNTLSPEEQTRIREKSMVVYEKHKAEIGADVVDAVLA 327