Pairwise Alignments

Query, 720 a.a., His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. from Pseudomonas stutzeri RCH2

Subject, 905 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  296 bits (759), Expect = 2e-84
 Identities = 210/618 (33%), Positives = 317/618 (51%), Gaps = 75/618 (12%)

Query: 103 EDRYWSATHTPILDEQGEVVAILQHTSDITELQAIKDSVSQAAGGRQPVQQLEQSVMSRA 162
           E+  +   +TPI DE G+V  ++    + TE                        V ++ 
Sbjct: 173 EEVIFDLFYTPIYDEDGKVGGVMCTVIENTE-----------------------KVEAQR 209

Query: 163 KLLQSEGEQLRRLFAQAPGFVCFLRGPRHVYELVNDAYRQVIGH--RQLLGKTIRDGLPE 220
            L +SE E LR +    P  + ++    HVY   N  Y   +G    +++G+ +RD + E
Sbjct: 210 ALAKSESE-LRIITDSLPVLISYVDAD-HVYRFANSFYEDWVGKPPSEVIGRHVRDVVGE 267

Query: 221 IEGQVLIGLLDDVYRTGQPYIGKRVSLFLKRQPEREPEEVILDFVLQPIVENDGKVIGIF 280
                 + L++     G+  +           P R  E+   +    P +E DG V G  
Sbjct: 268 KTYVARLPLIERA-MAGEWVVADTT------MPHRSGEDRAAEVRYIPRIEADGSVAGFH 320

Query: 281 VQGQDVTEQQRNEMELRR---YRDHLEELVRERTLALQ----QSEAERQMTEQALLQAQR 333
           V   D+ ++ R E  L R   +R+  EE +R     L+    +  AER+  E  L Q+Q+
Sbjct: 321 VLVFDIEDRVRREAALERQVQHRERAEEQLRHLNETLETRVVEEMAERRQAEAILAQSQK 380

Query: 334 LEAVGKLTGGIAHDFNNMLQIIGGNLQLLRRSLGSDETAARRLDSAVSGVEKGARLASQL 393
           +E +G+LTGG+AHDFNN+LQ++ GNLQLL R +  +E A  R+ +A++GV +GA+LA+QL
Sbjct: 381 METIGQLTGGVAHDFNNLLQVVSGNLQLLARDIAGNEKAETRVANAMAGVTRGAKLAAQL 440

Query: 394 LAFASRQPLLPQQVHLPDLLEQMHELLNGALGSAVQLELQVLGRPWPVFVDVGNLQSVVL 453
           LAF  RQ L P+ V++   +  M ++L  A+G  +++E  V G  W  FVD   +++ +L
Sbjct: 441 LAFGRRQALEPKVVNVTRFVRDMDDMLRRAIGEGIEVETIVGGGLWNTFVDPAQVENALL 500

Query: 454 NLAANARDAMSGGGRVVLRLENRLLGADVPVGQG----GGYVLLSVIDEGSGMTEDVRAR 509
           NLA NARDAM G G++ + L N  L  +          G YV+L+V D GSG+  ++  +
Sbjct: 501 NLAINARDAMEGQGKLTIELGNASLDDEYARSHSEVAPGQYVMLAVTDTGSGIPPEIIEK 560

Query: 510 AFEPFFTTKQNSNASGLGLSMVYGFVKQSGGFVTLESGEQGGTAVHVHLPRHVENEPQLP 569
            F+PFF+TK     SGLGLSMVYGFVKQSGG V + S    GT + ++ PR VENE    
Sbjct: 561 VFDPFFSTKSEGKGSGLGLSMVYGFVKQSGGHVKIYSEVGEGTTIKLYFPRSVENE---- 616

Query: 570 GQGGDGAVESIQDDASRSAPESGADSVDGSLRILFVEDDPTLRMLTGEVMMELGHEVVAS 629
               D  VE        S P  G     GS  +L VEDD  +R    E++ +LG+ V+ +
Sbjct: 617 ----DLEVE------LDSGPIRG-----GSETVLVVEDDDAVRATVVEMLNDLGYGVLKA 661

Query: 630 ETAEEALEILERQ-PFDVLLTDVGLAG-MSGIDLAREAGTRLPRLSLVIASGYPVNA--- 684
             A  AL ++E     D+L TDV + G +   +LAR A  R P ++++  SGY  N+   
Sbjct: 662 VDASSALSVIESGIQIDMLFTDVVMPGRLKSAELARMARERQPDIAVLFTSGYTENSIVH 721

Query: 685 ---SDVGLDRLRTMLKPY 699
               D G++ L    KPY
Sbjct: 722 GGRLDAGVELLS---KPY 736



 Score = 67.8 bits (164), Expect = 2e-15
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 2/137 (1%)

Query: 584 ASRSAPESGADSVDGSLRILFVEDDPTLRMLTGEVMMELGHEVVASETAEEALEILERQP 643
           ++RSAP+   +  +     L VEDD  +   T E++ +LG  V+ + +AE+A+  L+   
Sbjct: 762 SARSAPDDKPERRNALA--LIVEDDAIILANTAELVKDLGLTVIEALSAEDAVSALQTTH 819

Query: 644 FDVLLTDVGLAGMSGIDLAREAGTRLPRLSLVIASGYPVNASDVGLDRLRTMLKPYDIHQ 703
            DVL+TD  L GM+G DLA  A   LP + ++ A+G      D    +   + KPYD   
Sbjct: 820 VDVLITDANLPGMTGPDLAAIARQMLPHIGIIFATGDTQLDYDRSAPKTVLLAKPYDGKA 879

Query: 704 VRELLDGIRAERAALHI 720
           + + +  +  +  ++HI
Sbjct: 880 LSQAIAEVGIDPISVHI 896



 Score = 44.3 bits (103), Expect = 3e-08
 Identities = 44/134 (32%), Positives = 58/134 (43%), Gaps = 24/134 (17%)

Query: 188 GPRHVYELVNDAYRQVIG--HRQLLGKTIRDGLPEI---EGQVLIGLL--DDVYRTGQPY 240
           GP HV  + ND Y  + G  H + +G T+    PEI     Q+L      + V    QP 
Sbjct: 106 GPEHVM-IYNDGYVAIAGDYHPKAMGGTVPGIWPEIWDFNRQILASGFGGEVVSHLDQPM 164

Query: 241 IGKRVSLFLKRQPEREPEEVILDFVLQPIVENDGKVIGIF---VQGQDVTEQQR----NE 293
           I  R            PEEVI D    PI + DGKV G+    ++  +  E QR    +E
Sbjct: 165 ILNRYGT---------PEEVIFDLFYTPIYDEDGKVGGVMCTVIENTEKVEAQRALAKSE 215

Query: 294 MELRRYRDHLEELV 307
            ELR   D L  L+
Sbjct: 216 SELRIITDSLPVLI 229