Pairwise Alignments

Query, 833 a.a., ribonuclease R from Pseudomonas stutzeri RCH2

Subject, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

 Score = 1295 bits (3351), Expect = 0.0
 Identities = 655/867 (75%), Positives = 720/867 (83%), Gaps = 44/867 (5%)

Query: 1   MADWQSLDPEAAREAEKYDNPIPSRELILQHLGERGSPAAREELVEEFGLVSEEDIEALR 60
           MADWQSLDPEAAREAEKYDNPIPSRELILQ L +RG PAAREEL +EFGL  E+ IEALR
Sbjct: 1   MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALR 60

Query: 61  RRLRAMERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLSPAQMR 120
           RRLRAMERDGQLIYTRRGTYAPVDKLDL+CGRVSGHRDGFGFLIPDDGS+DLFLSP+QMR
Sbjct: 61  RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMR 120

Query: 121 LVFDGDRCLARVAGLDRRGRREGAIVEVISRAHESIVGRYHIESDVGFVIPDNPKIQQEV 180
           LVFDGDR LARV+G+DRRGRREG +VEVISRAHES+VGRY  E  +G+V PDNPKIQQEV
Sbjct: 121 LVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV 180

Query: 181 LVTPGRALDAKPGQFVEVKITHWPTQRFQPQGDIVEVIGNYMAPGMEIDVALRSFDIPHV 240
           LVT GR   AK GQFVE+KITHWPT RFQPQGD+VEVIGNYMAPGMEIDVALRS+DIPHV
Sbjct: 181 LVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHV 240

Query: 241 WPEAVLKEASRLKPEVEEKDKHKRVDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKLLTG 300
           WP  V+KEA + + EVEEKDK KRVDLRHLPFVTIDGEDARDFDDAVYCE  G  +L +G
Sbjct: 241 WPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSG 300

Query: 301 GFRLYVAIADVSHYVKVDSALDKESVVRGNSVYFPERVVPMLPEELSNGLCSLNPQVDRL 360
           G+RLYVAIADVS YV++ SALD E+  RGNSVYFPERVVPMLPEELSNGLCSLNP VDRL
Sbjct: 301 GWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL 360

Query: 361 AMVCEITLSKSGKMTDYQFYEAVIHSHARLTYNKVSAMLEQPKSAEGKRLSAEYAEVLPH 420
           AMVCE+T++K+G+M DYQFYE VIHSHARLTYNKVS+MLE  ++ EGK L  EY EV+P 
Sbjct: 361 AMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPD 420

Query: 421 LKQLYSLYKVLLKARHTRGAIDFETQETRIVFGSDRKIAEIKPTERNDAHKLIEECMLCA 480
           LK LY+LYKVL++ARHTRGAIDFETQETRI+FG +RKIAEI+PT RNDAHKLIEECML A
Sbjct: 421 LKNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAA 480

Query: 481 NVATAAFLQKHEIPALYRVHDAPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLEQ 540
           NVATA FLQKH +PALYRVHD PP ER EKLRAFLGELGLSLHKGK+ P+PKDYQALL  
Sbjct: 481 NVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKD-PSPKDYQALLAS 539

Query: 541 IQGRPDFHVIQTVMLRSLSQAVYSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRSV 600
           I GRPDFH+IQTVMLRSLSQAVYS EN+GHFGLNYEAY HFTSPIRRYPDLLVHRAIRS+
Sbjct: 540 IAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSI 599

Query: 601 IRSRRDTPHVRREGATSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVTNWLKCEF 660
           IRS+ DTPHV+R GA S+PKARIYPYDE  LEQLGEQCSMTERRADEATRDV NWLKCEF
Sbjct: 600 IRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEF 659

Query: 661 MKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPGDYYHFDPLHHRLSGERSGR 720
           MKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHV+A+PGDYYHFDP+HHRL+GER+GR
Sbjct: 660 MKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGR 719

Query: 721 SFRLGDSVEVRVMRVDLDERKIDFELI--------------------------AGGTKSA 754
           SFRLGD++EV+VMRVDLDERKIDFE+                           A   K+ 
Sbjct: 720 SFRLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAEQQPATEAKAT 779

Query: 755 PGQRDGEGRGRE--------PGNADVRKSRELKKALLEEAKGGRKGKGEKSTGSKSRSGS 806
           P  R  +    E          NA+VRKSRE+KKAL+ +A+         S GSKS  G 
Sbjct: 780 PKPRSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDAR--------SSAGSKSEKG- 830

Query: 807 AKPKSAAKSGDKPSAASGGPRKRKAKS 833
            KP        K    SG PRK K+ S
Sbjct: 831 GKPSGKPTKHRKGPPKSGAPRKNKSNS 857