Pairwise Alignments

Query, 332 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas stutzeri RCH2

Subject, 334 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  143 bits (361), Expect = 5e-39
 Identities = 96/322 (29%), Positives = 155/322 (48%), Gaps = 3/322 (0%)

Query: 10  IGLLLYPGAQLAAVYGLTDLFSVANRMAAERGAAKLPTLRVTHWSLQD--GTSGIQRVFD 67
           + +L +  AQ+  V G   +F+  N +A +RG      + V     +    ++G+  V +
Sbjct: 5   VHVLAFDNAQVLDVTGPLQVFASTNDLARQRGEPLPYAVSVIAAQSEPVMTSAGLALVAE 64

Query: 68  SLPGSQRSPRIIILPPCLEARPEAHVIQPFAAWLGQCHQAGVTLGSVCAGAFLLAETGLL 127
            LP +      +++         A        W+ +  +    + SVC GAFLLA +G+L
Sbjct: 65  PLPAADAPCDTLVIAGGWGVYGAAED-PALVDWVREKAKHTRRMTSVCTGAFLLAASGML 123

Query: 128 DGRTVTTHWGLAQALRERFPNVQVDADRMIVDDGDIITAGGLMAWTDLGLALVERLLGPT 187
           DG  V THW   + L  +FP++ V+++ + +  G + T+ G+ A  DL LALVE  LG  
Sbjct: 124 DGCRVATHWTRCEELARKFPSLTVESNPIFIQQGAVWTSAGVTAGIDLCLALVEEDLGRA 183

Query: 188 IASETARYLVIDLTRQSQRYFSSFAPRLDHGDEAVLRVQRWLQSQSASAVPVAAMAAQAG 247
           IA E AR+LV+ L R   +   S    L   D     +  W+       + +  +AAQAG
Sbjct: 184 IALEVARHLVVFLKRPGGQSQFSVTLSLQKDDSRFAELHAWMAENLTLDLNIPTLAAQAG 243

Query: 248 MGERTFLRRFRAATGLKPTEYCQQLRVGKARELLELTNRGIEQVAWAVGYQDPGAFRKVF 307
           M ER+F+R +RA TG  P    + +RV  AR  L  +   I+++A   G+      R+ F
Sbjct: 244 MSERSFVRHYRAETGQTPARAVELIRVETARRQLADSTASIKRIAVQCGFGCEETLRRSF 303

Query: 308 QRLVGLSPGDYRRRFGSGTQPS 329
            R + ++P  YR RF   +  S
Sbjct: 304 LRALSVTPQAYRERFSPSSSSS 325