Pairwise Alignments

Query, 679 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 664 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  124 bits (311), Expect = 1e-32
 Identities = 115/378 (30%), Positives = 176/378 (46%), Gaps = 30/378 (7%)

Query: 312 RQRALFGALMDVTELKAGEGDLAGEKRRYERMVDGLPDGVLMLR-QGRIHYANAAARRLL 370
           +QR L   L+   E  A     A   R  +  +D    G+L +     + YAN AA  +L
Sbjct: 300 QQRVLEHNLLAAREESAARAAGAEALRLTQFSIDQSTVGILWVNWDSHVRYANRAAESML 359

Query: 371 AGDPLQPLDAQPFIEFVAEHQRARETARLAALQRGAAAGQ--PQRLLLVCR--DGQPFEA 426
              P   L  +P +        + +  R   L + A A +  PQ     CR  DG     
Sbjct: 360 GYGP-GALIERPLVAL----DPSLDMDRWLNLWKRARASEDGPQNFATDCRRADGSILPT 414

Query: 427 EVSETLLPADGDAEVQLLIRDVSQAEQLRRDLE---DANQRLQHLSQRLIEVQEIERREV 483
            VS + L     AE + L+  ++   +LRR L     +  +L+ LS  L  V+E E+  +
Sbjct: 415 NVSLSFLRF---AEAEYLVVYLNDVTELRRTLAALLQSEAQLRELSAHLETVREEEKARI 471

Query: 484 ARDLHDDVGQHLTGLKLHLQ--RLIRRQAGDSEFERLSQPLVASMDAALAK----VRSLS 537
           AR++HD++GQ LT LKL      L   Q      ERL+     SM   +A+    VR ++
Sbjct: 472 AREVHDELGQMLTVLKLETSMCELAYAQLDPGLHERLN-----SMKRLIAQLFQLVRDVA 526

Query: 538 LSLHPLQLETLGLEAAVRWHLQHFLEASGTCWELEVRGSTTEIPPGRAVAAFRLVQEAVN 597
            +L P  L+  G+ +A+ W  + F   +     ++V  +   +   +A+  FR++QEA+ 
Sbjct: 527 TALRPPILDA-GIASAIEWQARRFEARTQIPCLVQVPDNLPTLSDAKAIGLFRILQEALT 585

Query: 598 NVARHARARTVRILMVCDEHELRLEILDDGRGFDVPEALQGAQSLGLTSMHERVASFGGD 657
           NV RHA+A TV + +  +  +LRL I DDG GF   +A     S GL  M ERV   GG 
Sbjct: 586 NVMRHAQAHTVELTLALEGTDLRLTISDDGVGF--VQAQGRPVSFGLVGMRERVLIMGGQ 643

Query: 658 LRISSLPGMGTRITALLP 675
           L + S  G GT ++  +P
Sbjct: 644 LSLDSELGEGTTLSVTVP 661