Pairwise Alignments

Query, 679 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 541 a.a., response regulator from Paraburkholderia sabiae LMG 24235

 Score =  145 bits (367), Expect = 4e-39
 Identities = 105/372 (28%), Positives = 178/372 (47%), Gaps = 12/372 (3%)

Query: 306 RIQLLGRQRALFGALMDVTELKAGEGDLAGEKRRYERMVDG--LPDGVLMLRQGRIHYAN 363
           R + L R  A   A +D  E +  +  L   + R+  +V+   +P  +  +  GRI Y N
Sbjct: 173 RTEELARANANLQAQID--ERRRADARLQASEARFRAIVETSPVPLCITSMPDGRILYTN 230

Query: 364 AAARRLLAGDPLQPLDAQPFIEFVAEHQRARETARLAALQRGAAAGQPQRLLLVCRDGQP 423
              R L   +     +   F     E +R  +  R     R     + QR      DG  
Sbjct: 231 EPLRALFGMNAGVAANIADFYADPLERERLIDHLRTEGSLRDTEV-RFQR-----PDGTR 284

Query: 424 FEAEVSETLLPADGDAEVQLLIRDVSQAEQLRRDLEDANQRLQHLSQRLIEVQEIERREV 483
           F A  +  +   D    + + + D++  +Q+ ++L ++ ++ + LS  +  ++E ER+ +
Sbjct: 285 FWAMATARVATYDDSPAIYVGMNDITGRKQMEQELVESREQQRELSAYMEAIREEERKRI 344

Query: 484 ARDLHDDVGQHLTGLKLHLQRLIRRQAGDSEFERLSQPLVASMDAALAKVRSLSLSLHPL 543
           A ++HD++GQ LT LK+ +  L  R A D+E  + +  +   ++  +  VR+++  L P 
Sbjct: 345 AMEIHDELGQLLTALKMDVSLLKMRLAHDAEATKKADDMRELVEGTIWMVRNVASHLRPA 404

Query: 544 QLETLGLEAAVRWHLQHFLEASGTCWELEVRGSTTEIPPGRAVAAFRLVQEAVNNVARHA 603
            L   G+ +A+ W +  F   +    EL + G    +    A A FR+VQ ++ NVARHA
Sbjct: 405 ALN-FGIVSALEWLVDEFNRRNAIPCELRIEGGEPVLSDAHATAVFRIVQASLTNVARHA 463

Query: 604 RARTVRILMVCDEHELRLEILDDGRGFDVPEALQGAQSLGLTSMHERVASFGGDLRISSL 663
           +A+ V + +V     L L + DDGRGFD  EA +   S GL  M+ER    G  L I S 
Sbjct: 464 KAKRVDVSLVSTADRLELRVRDDGRGFD-REAARREYSYGLLGMYERARLIGATLSIDSA 522

Query: 664 PGMGTRITALLP 675
           PG GT ++  +P
Sbjct: 523 PGAGTTVSIHIP 534



 Score = 32.0 bits (71), Expect = 8e-05
 Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 17/178 (9%)

Query: 75  RRLADGVIRSQKLVGRAENSYRMLFDRHPAPMWLFDKRTLSIVRGNRQAVAAYGYSAGEF 134
           RR AD  +++      +E  +R + +  P P+ +       I+  N    A +G +AG  
Sbjct: 191 RRRADARLQA------SEARFRAIVETSPVPLCITSMPDGRILYTNEPLRALFGMNAGVA 244

Query: 135 AELEILDLYA-AHERERLEALAQPVTPQQLAGLRQHVAR-DGRELNVEVLCSALDIDESP 192
           A   I D YA   ERERL  +    T   L        R DG              D+SP
Sbjct: 245 A--NIADFYADPLERERL--IDHLRTEGSLRDTEVRFQRPDGTRFWAMATARVATYDDSP 300

Query: 193 FALLMAQEVSAHFQTETQLASALRKLELARHLAQMAYWQRLPGSEQVDWSPEIGDVLG 250
              +   +++   Q E +L   +   E  R L+  AY + +   E+   + EI D LG
Sbjct: 301 AIYVGMNDITGRKQMEQEL---VESREQQRELS--AYMEAIREEERKRIAMEIHDELG 353