Pairwise Alignments

Query, 439 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  267 bits (682), Expect = 5e-76
 Identities = 156/406 (38%), Positives = 220/406 (54%), Gaps = 27/406 (6%)

Query: 38  SLINRNFYFNRDFRDGESAAGNGYSEEWAHGLMAFFESGYTQGSVGIGFDAFAMLGLKLD 97
           SL++RN++ + DFR   S +G  Y +EWA G +    SG+T+G+VG+G DA   LGLKLD
Sbjct: 31  SLLSRNYFLHSDFRS-PSGSGQNYRQEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLD 89

Query: 98  SGSGRSGVGGSIDLLPHDSAGDPEDDFTRVGGAVKARLLDTEIKAGDVFPTTPVVHFGDS 157
            G G SG G    LLP DS G  E +++  G A+K +L +T+++ G++   TPV   GD 
Sbjct: 90  GGRGHSGTG----LLPRDSDGRAESEYSSAGAALKMQLGNTQLRYGEMMVETPVFDTGDK 145

Query: 158 RLLPESFKGVTVVNNSLDDLTLQGGRLHAMSQPNTSNMNEDFVTFYGGGVDAPWLGYAGG 217
           RL PE   G  V N    D  LQ GR  A +  + S+ ++DF + YG       +  AG 
Sbjct: 146 RLHPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNSSTHDDF-SGYGATTHNRAISLAGA 204

Query: 218 DYSVNENISLSLYTSRLKDAWNQHYFG---ASATYPLSDIVALLASFNYYKATDEGRELL 274
            ++ N     +LY  +L++ W Q Y     A   + L          N YK  D G    
Sbjct: 205 TFAPNGPFGAALYAGQLENTWRQAYLNLNLAQGNWRLDG--------NLYKTRDTGNASA 256

Query: 275 GEFNNNIWSSSLGVAFGAHTVTASYQRNNGNNDFDYLRQADSIYLNNSIQYSDFNSPKEQ 334
           G  +   +S     +FGA  ++ +YQ+  G+  FD++   DSIYL N+I+Y+DFN P E 
Sbjct: 257 GAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDFVG-GDSIYLANAIKYADFNGPGEH 315

Query: 335 SWMLRYDLNMAEYGIPGLTFMTRYARGWGADYSN--ANEVYMRQDDNGAPLTGQNRWERD 392
           SW LRYDLN A  G PGL+ M RY  G G D S+  A   Y+ Q  +G        WERD
Sbjct: 316 SWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGAYVNQYGDGG-----KHWERD 370

Query: 393 VEARYVVQTGSLKDLSLRVRQATTRATAFES--DLDEVRFIAEYPL 436
           ++ +YVVQ+G+ KDLSL     + RA   ++  D+D +  I EYPL
Sbjct: 371 IDLKYVVQSGAAKDLSLSFSHVSHRANQAQAGDDIDRIYLIIEYPL 416