Pairwise Alignments

Query, 439 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  248 bits (632), Expect = 3e-70
 Identities = 155/426 (36%), Positives = 223/426 (52%), Gaps = 39/426 (9%)

Query: 28  AEGFIEGSTLSLINRNFYFNRDFRDGESAAGNGYS--EEWAHGLMAFFESGYTQGSVGIG 85
           A GF+E ++  +  RN YFNRDFRDG S++  G S  EEWA G +   +SGYTQG VG+G
Sbjct: 31  AAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILNVQSGYTQGPVGVG 90

Query: 86  FDAFAMLGLKLDSGSGRSGVGGSIDLLPHDSAGDPE---DDFTRVGGAVKARLLDTEIKA 142
            DA  M G KLDS    S  G    LLP  S  DP    D + ++G A K ++ +T +K 
Sbjct: 91  VDALGMFGFKLDSSPADSNSG----LLP-SSGHDPRRSADQYAKMGLAAKVKVSNTVLKY 145

Query: 143 GDVFPTTPVVHFGDSRLLPESFKGVTVVNNSLDDLTLQGGRLHAMSQPNTSNMNEDFV-- 200
           G + P  P++ + D RLLP  F G  + +  L DL     RL   +  ++++  +  V  
Sbjct: 146 GSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDSTDRQDIRVHC 205

Query: 201 --TFYGGGVDAPWLGYAGGDYSVNENISLSLYTSRLKDAWNQHYFGASATYPLSDIVALL 258
               Y    +A     AG DY  NE  S     ++L++ + QH+ G  A+ PL  + +L 
Sbjct: 206 KNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLVASQPL-PVGSLS 264

Query: 259 ASFNYYKATDEGRELLGEFNNNIWSSSLGVAFGAHTVTASYQRNNGNNDFDYLRQADSIY 318
           A     K+ D G    GE ++  +S  LG + G H ++A +QR  GN+   YL    + Y
Sbjct: 265 ADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAMPYL-DGSNPY 323

Query: 319 LNNSIQYSDFNSPKEQSWMLRYDLNMAEYGIPGLTFMTRYARGWGADYSNANEVYMRQDD 378
           L N  Q +DF + +E+SW +RYD +    G+PGLTF TRY  G                D
Sbjct: 324 LVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYING----------------D 367

Query: 379 N----GAPLTGQNRWERDVEARYVVQTGSLKDLSLRVRQATTRAT--AFESDLDEVRFIA 432
           N    G+ + G+  WERD E +Y VQ+G+ KD+S+R+R +T R+    +  D+DE R I 
Sbjct: 368 NIKVPGSSVEGK-EWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIV 426

Query: 433 EYPLSI 438
            Y  SI
Sbjct: 427 SYNFSI 432