Pairwise Alignments

Query, 439 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 426 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  232 bits (591), Expect = 2e-65
 Identities = 159/421 (37%), Positives = 221/421 (52%), Gaps = 20/421 (4%)

Query: 21  VFAQSETAEG-FIEGSTLSLINRNFYFNRDFRDGESAAGNGYSEEWAHGLMAFFESGYTQ 79
           ++   +TA+  FI   + SL  RNFYF+RDF  G+SA  +   E WA G M   +SGYT 
Sbjct: 15  LYCACQTAQAAFIHDGSGSLELRNFYFDRDFH-GDSATQSRRGE-WAQGFMLRLQSGYTD 72

Query: 80  GSVGIGFDAFAMLGLKLDSGSGRSGVGGSIDLLPHDSAGDPEDDFTRVGGAVKARLLDTE 139
           G VG G DA  MLGLKLDS   RSG G    LLP  S     DD+ +     KARL  +E
Sbjct: 73  GVVGFGLDAAGMLGLKLDSSPDRSGSG----LLPRGSDKRAADDYAKAVATFKARLAQSE 128

Query: 140 IKAGDVFPTTPVVHFGDSRLLPESFKGVTVVNNSLDDLTLQGGRLHAMSQPNTSNMNEDF 199
           +KAG + P  P++    SRL P+ F GV +V+  LD  T    ++ A    ++++  ED 
Sbjct: 129 LKAGGLSPQLPLLASNSSRLFPQWFNGVQLVSKDLDRFTFTLLQVDATKLRDSTDY-EDL 187

Query: 200 VTF-----YGGGVDAPWLGYAGGDYSVNENISLSLYTSRLKDAWNQHYFGASATYPLSDI 254
                   Y   V +  L YAG DY    N++LSL+TS L+D + + + G      L   
Sbjct: 188 TAMAQQGAYSATVTSDRLRYAGVDYQPLNNLTLSLHTSVLEDLFRRDFAGFKFKTRLGP- 246

Query: 255 VALLASFNYYKATDEGRELLGEFNNNIWSSSLGVAFGAHTVTASYQRNNGNNDFDYLRQA 314
             +   + ++ A ++GR LLG  +N   S++ G +   HT +  YQ+  G+  + Y+   
Sbjct: 247 GDVFTEWRWFNAREQGRALLGGVDNQTLSTNFGYSVQGHTFSGGYQKVRGDTAYAYVGGT 306

Query: 315 DSIYLNNSIQYSDFNSPKEQSWMLRYDLNMAEYGIPGLTFMTRYARGWGADYSNANEVYM 374
           D+ YL +  Q S F    E++WMLRYD N A  GIPGLTF  RY +G   D      V  
Sbjct: 307 DT-YLFSEQQVSTFALANERAWMLRYDYNFAAVGIPGLTFNVRYVKGDQVDPQRIASVKG 365

Query: 375 RQDDNGAPLTGQNR-WERDVEARYVVQTGSLKDLSLRVRQATTRATAFESDLDEVRFIAE 433
           R    G    G+ R WER  +  YVVQ+G+L+++SLR R A+ R+  F    DE R I  
Sbjct: 366 RALAAG---DGEGREWERTTDITYVVQSGALRNVSLRWRNASMRSN-FADAADENRVIVG 421

Query: 434 Y 434
           Y
Sbjct: 422 Y 422