Pairwise Alignments

Query, 439 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 416 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  244 bits (622), Expect = 5e-69
 Identities = 159/428 (37%), Positives = 227/428 (53%), Gaps = 28/428 (6%)

Query: 11  ALSLALGSAPVFAQSETAEGFIEGSTLSLINRNFYFNRDFRDGESAAGNGYSEEWAHGLM 70
           AL L L S P+ A      GF E S  +L  RN+YF+RDF D   A     +EEWA G +
Sbjct: 8   ALGLTLLSQPLLAAEG---GFFEDSKATLSARNYYFSRDFSDIVGANKQSKAEEWAQGFI 64

Query: 71  AFFESGYTQGSVGIGFDAFAMLGLKLDSGSGRSGVGGSIDLLPHDSAGDPEDDFTRVGGA 130
             F+SGYT G VG G DA  +LG+KLDS   R+  G    LLP    G   D+++R+   
Sbjct: 65  LDFKSGYTPGPVGFGVDALGLLGIKLDSSPDRTNTG----LLPVHGDGRAADEYSRLAPT 120

Query: 131 VKARLLDTEIKAGDVFPTTPVVHFGDSRLLPESFKGVTVVNNSLDDLTLQGGRL---HAM 187
            KARL  TE++AG++ P  PV+ F D RLLP +++GV++ ++ +D LT+Q G L   H  
Sbjct: 121 FKARLSKTELRAGELQPNLPVLTFSDIRLLPPTYQGVSLSSSEIDGLTMQAGHLKSTHLR 180

Query: 188 SQPNTSNMNEDFVTFYGGGVDAPWLGYAGGDYSVNEN-ISLSLYTSRLKDAWNQHYFGAS 246
           ++     MN           ++    Y GGDY+ N N  S+SL+  +L+D + Q + G  
Sbjct: 181 NEGGDGKMNAMLGHVPMRQAESDAFNYVGGDYAFNANQSSVSLWYGQLEDIYQQGFVGLK 240

Query: 247 ATYPLSDIVALLASFNYYKATDEGRELLGEFNNNIWSSSLGVAFGAHTVTASYQRNNGNN 306
            + P+ D V L A+  Y+ A ++G  LLG  +N  + S      G H+  A YQ   G++
Sbjct: 241 HSKPVGDWV-LSANLGYFTAREQGDALLGNIDNQAFFSLFTARHGGHSFHAGYQGIYGDS 299

Query: 307 DFDYLRQADSIYLNNSIQYSDFNSPKEQSWMLRYDLNMAEYGIPGLTFMTRYARGWGADY 366
            F  +  A+   L N +   +F    E+S+ +RYD N A  G+PGLT   RY  G     
Sbjct: 300 PFPRV-FANISPLGNEVPTYEFAYTDERSYQVRYDYNFAAMGVPGLTATVRYITG----- 353

Query: 367 SNANEVYMRQDDNGAPLTGQNRWERDVEARYVVQTGSLKDLSLRVRQATTRATAFESDLD 426
              N V     D G    G++R ERD++  Y VQ+G+LK L +RVR A  R+  + SD+D
Sbjct: 354 ---NNV-----DTGLGYEGRDR-ERDLDIGYAVQSGALKGLGIRVRNAMARSN-YRSDID 403

Query: 427 EVRFIAEY 434
           E R    Y
Sbjct: 404 ENRLTLVY 411