Pairwise Alignments

Query, 439 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 417 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  247 bits (631), Expect = 4e-70
 Identities = 152/417 (36%), Positives = 218/417 (52%), Gaps = 29/417 (6%)

Query: 28  AEGFIEGSTLSLINRNFYFNRDFRDGES----AAGNGYSE--EWAHGLMAFFESGYTQGS 81
           A GFIE S L L  RN YFN +FRD +     AA    SE  EWA G +  ++SG+TQG+
Sbjct: 23  AAGFIEDSKLKLQLRNVYFNENFRDEQGMSARAAATAKSERVEWAQGFLLDYQSGFTQGT 82

Query: 82  VGIGFDAFAMLGLKLDSGSGRSGVGGSIDLLPHDSAGDPEDDFTRVGGAVKARLLDTEIK 141
           +G+G DA  +LG++LDSG GRSG G    LLP    G   D+F   G   KARL  T +K
Sbjct: 83  LGLGVDAMGLLGVRLDSGRGRSGTG----LLPVHDDGRAADEFASAGITAKARLGSTVVK 138

Query: 142 AGDVFPTTPVVHFGDSRLLPESFKGVTVVNNSLDDLTLQGGRLHAMSQPNTSNMNEDFVT 201
            G + P TPV+ + D+RLLP++++G  + +  +D+LTL  G L    Q ++S+    ++ 
Sbjct: 139 HGTLLPKTPVLVYNDARLLPQTYQGTQLTSTDIDNLTLTAGHLDRFKQRDSSDSTGLYLD 198

Query: 202 FYGGGVDAPWLGYAGGDYSVNENISLSLYTSRLKDAWNQHYFGASATYPLSDIVALLASF 261
            YGG     +  +AG DY+V++ + LS +   L+  + Q + G     PL   V L    
Sbjct: 199 GYGGPASGDF-SFAGADYAVSKQLRLSYFHGELEHFYRQDFAGLVHDLPLGGGV-LTTDL 256

Query: 262 NYYKATDEGRELLGEFNNNIWSSSLGVAFGAHTVTASYQRNNGNNDFDYLRQADSIYLNN 321
            Y+K+ D G    G  +N+++S  L  A   HTV A YQ  +G     Y+  A ++Y  +
Sbjct: 257 RYFKSRDSGTAYGGGIDNDMFSGQLSYAHSGHTVGAGYQVLDGEAGLPYISGA-TVYSFS 315

Query: 322 SIQYSDFNSPKEQSWMLRYDLNMAEYGIPGLTFMTRYARGWGADYSNANEVYMRQDDNGA 381
           ++    F   +E++WM  Y  N A  G+PGLTFMTRY  G               D+  +
Sbjct: 316 NVGIGKFIEEEEKTWMASYAYNFAAAGVPGLTFMTRYLSG---------------DNGRS 360

Query: 382 PLTGQNRWERDVEARYVVQTGSLKDLSLRVRQATTRATAFESDLDEVRFIAEYPLSI 438
              G   WERD E  YVVQ G LK L +++R    R+  F    D  R    Y ++I
Sbjct: 361 GGEGIKEWERDAEIAYVVQGGPLKGLGVKLRNYVYRSD-FARGRDSNRLYLTYDIAI 416