Pairwise Alignments

Query, 439 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 459 a.a., glycine-glutamate dipeptide porin from Pseudomonas putida KT2440

 Score =  246 bits (628), Expect = 1e-69
 Identities = 154/464 (33%), Positives = 244/464 (52%), Gaps = 37/464 (7%)

Query: 6   VFSLTALSLALGSAPVFAQSET------------------AEGFIEGSTLSLINRNFYFN 47
           VF+LTAL+L++ +    AQ++                   A GFI+G +LS   RN+Y  
Sbjct: 3   VFTLTALALSISAFSTVAQADPQSQDYLPLTLKSSSEQAQASGFIDGQSLSGSTRNWYAR 62

Query: 48  ---------RDFRDGESAAGNGYSEEWAHGLMAFFESGYTQGSVGIGFDAFAMLGLKLDS 98
                    + +++  +       E W  G +  + SG+TQG+VG   +A     + L  
Sbjct: 63  ERAARAPLWKYYKNDGTRHDTHSRENWVQGTILNYSSGFTQGTVGFAVEAAGYNAIALQQ 122

Query: 99  GSGRSGVGGSIDLLPHDSAGDPEDDFTRVG-GAVKARLLDTEIKAGDVFPTTPVVHFGDS 157
              R  + G  +     S GDP   ++++G G +KAR+ +T +  G     TP++ +  +
Sbjct: 123 S--REAIAGPNNRTLTHSDGDPVGQWSKLGLGNIKARVSNTTLTLGRQSVDTPMIAYIGN 180

Query: 158 RLLPESFKGVTVVNNSLDDLTLQGGRLHAMSQPNTSNMNEDFVTFYGGGVDAPWLGYAGG 217
           R LP SF+G  + +   D+L++  G    +S     ++++    +   GV+      AG 
Sbjct: 181 RALPSSFQGAFLHSAEFDNLSIDLGTFDRVSPRTEQSLSKFRSEYSATGVETDRASTAGI 240

Query: 218 DYSVNENISLSLYTSRLKDAWNQHYFGASATYPLSDIVALLASFNYYKATDEGRELLGEF 277
           +Y   +++S SLY ++++D WNQ+YFGA+     S +++L    NYYK  D G + +G+ 
Sbjct: 241 NYQPFKSLSTSLYATKVEDFWNQYYFGANHVLGDSAVLSLSTGLNYYKTVDAGSQKMGKI 300

Query: 278 NNNIWSSSLGVAFGAHTVTASYQRNNGNNDFDYLRQADSIYLNNSIQYSDFNSPKEQSWM 337
           +N+ +S SLG+   AHT++AS+Q+ NGN  FDYL + + I+L NS+  SDFN P E+S  
Sbjct: 301 DNDTYSLSLGLTHQAHTLSASWQQVNGNEYFDYLHETNGIFLANSL-LSDFNGPNEKSLQ 359

Query: 338 LRYDLNMAEYGIPGLTFMTRYARGWGADYSNANEVYMRQDDNGAPLTGQNRWERDVEARY 397
           L Y LNMA YG+PGL F    ARGWG D ++        D NG  L G+  +E  +   Y
Sbjct: 360 LSYVLNMAPYGVPGLKFNLYNARGWGIDGTHYRGT--AYDVNG--LDGETHYEWGIGTSY 415

Query: 398 VVQTGSLKDLSLRVRQATTRATAFESD--LDEVRFIAEYPLSIL 439
            +Q+G LKD S+R    T RA+  + D  LDE R +   P +IL
Sbjct: 416 ALQSGPLKDTSIRATYTTHRASKAQGDGSLDEFRVVTTIPFNIL 459