Pairwise Alignments

Query, 439 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  330 bits (846), Expect = 5e-95
 Identities = 192/456 (42%), Positives = 269/456 (58%), Gaps = 37/456 (8%)

Query: 5   AVFSLTALSLALGSAPVFA---QSETAEGFIEGSTLSLINRNFYFNRDFRDGESAAGNGY 61
           + F  T L +AL +   FA     + A+GFIEGS+ +L  RN YFNRD  +    AG   
Sbjct: 3   SAFRFTPLFIALTATIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRDNHN----AGVRD 58

Query: 62  SEEWAHGLMAFFESGYTQGSVGIGFDAFAMLGLKLDSGSGRSGVGGSIDLLPHDSAGDPE 121
           + EW  G +A FESGYT G VG G DA AMLGLKLD G G +G      +LP     D E
Sbjct: 59  TREWGQGAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHAGTS----ILPEHIKDDGE 114

Query: 122 -----DDFTRVGGAVKARLLDTEIKAGDVFPTTPVVHFGDSRLLPESFKGVTVVNNSLDD 176
                  F+  G AVK +  DTE+KAGD+F T PV+  G++R+LP++F+GV++ N S+D 
Sbjct: 115 LGAAPHSFSTAGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDG 174

Query: 177 LTLQGGRLHAMSQPNTSNMNEDFVTFYGGGVD---APWLGYAGGDYSVNENISLSLYTSR 233
           L L+GG++ + + P   + +    T+YG   +   +  L +AG  +S  E+I+ +LY + 
Sbjct: 175 LLLEGGQV-SFTHPYNQSGHRRIDTYYGSLDEHDKSKHLNWAGASWSGTEHITANLYAAE 233

Query: 234 LKDAWNQHYFGASATYPLSDIVALLASFNYYKATDEGRELLGEFNNNIWSSSLGVAFGAH 293
           LKD WNQ+Y     TY ++D+V+L    ++Y   D G+ LLG+ +NN +S    V  G H
Sbjct: 234 LKDIWNQYYADFDYTYVVNDLVSLNPGVHFYHTQDTGQALLGKIDNNTYSVHFTVNAGFH 293

Query: 294 TVTASYQRNNGNNDFDYLRQADSIYLNNSIQYSDFNSPKEQSWMLRYDLNMAEYGIPGLT 353
           +VTA+YQR NGN  FDY+   DS+YL+NS  YSDFN+P E+SW L+Y  + A  G+PGL+
Sbjct: 294 SVTAAYQRVNGNTPFDYINLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLS 353

Query: 354 FMTRYARGWGADYSNANE-----VYMRQDDNGAPLTGQNRWERDVEARYVVQTGSLKDLS 408
               Y+RG  AD + A +      Y R+D   A       WERD++ +YV Q G LKDLS
Sbjct: 354 TSLSYSRG-EADLTKATQDTTHYDYYREDGKNA-----MHWERDLDVKYVFQEGDLKDLS 407

Query: 409 LRVRQATTRATA------FESDLDEVRFIAEYPLSI 438
           + VR AT R +         SD DE+R I +YPL++
Sbjct: 408 VLVRYATHRGSQGYASIDSNSDNDELRVIVDYPLNV 443