Pairwise Alignments

Query, 483 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 295 a.a., Membrane-fusion protein from Variovorax sp. SCN45

 Score = 82.8 bits (203), Expect = 1e-20
 Identities = 77/267 (28%), Positives = 117/267 (43%), Gaps = 31/267 (11%)

Query: 120 DVAVVQARAG-GFVERVYDRAPEDV------IEKGAPLADLLVPEWVAAQEEYLALKGIG 172
           D A+ QARAG    +  +  A  DV      +  GA  AD L    V  +    AL+   
Sbjct: 35  DAAIAQARAGVQAAQEAWRDAQHDVNQNAQLVPAGAISADALRKSRVREETTRAALEQ-A 93

Query: 173 EPQLLAAARQRLRLAGMPPEVIVQLERTGKARPVWTVRSPIGGVLNSLDVREGMTVSTGA 232
           +  L AA  QR  +                     T+ SP+ GV+ S+  R G   + GA
Sbjct: 94  QSALAAAQAQRNYV---------------------TITSPVDGVVVSVARRSGEMAAPGA 132

Query: 233 SLARVNGLEKVWLEVAVPEAQVANVAPGQLVNARLPAFAGEVLEGTIQAVLPQANLDSRT 292
            L  V   E +  +  VPE  +A V  G  +  R+ A   E L+G ++ V+P  +  +R 
Sbjct: 133 PLMTVESREVLLFKAFVPERSLAAVKAGDSIPVRIDALGDERLKGRVRGVVPSGDGVTRR 192

Query: 293 VRVRVELPNPQQRLRPGMTAEVTLSRNVEDVLVIPSEAVIRTGRRALVMLAEDQGRYRPI 352
             V + LP    RL PGM   + +  + +  + +P  A++R G    V + +D G  R  
Sbjct: 193 YEVDIVLPR-DARLLPGMFGRLEILLDEKRAVTVPRAALVRRGGLDGVFVLQD-GVARFR 250

Query: 353 EVRTGREFDDQTEVLEGLEAGQKVVAS 379
            +RTG+   D  EV  GL  G+ ++AS
Sbjct: 251 WLRTGQRLGDVVEVSAGLSDGETILAS 277



 Score = 28.5 bits (62), Expect = 3e-04
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 209 VRSPIGGVLNSLDVREGMTVSTGASLARVNGLEKVWLEVAVPEAQ 253
           V S + G +  LDVREG  V  G  L R++  +   ++ A+ +A+
Sbjct: 1   VASRVTGFIRQLDVREGQAVRRGDLLLRIDASD---IDAAIAQAR 42