Pairwise Alignments

Query, 209 a.a., pseudouridine synthase from Pseudomonas stutzeri RCH2

Subject, 217 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score =  226 bits (575), Expect = 3e-64
 Identities = 115/201 (57%), Positives = 146/201 (72%), Gaps = 3/201 (1%)

Query: 6   RPHPPRAAAARTPSRRVAKAPPAEPRLLLLNKPFDVLTQFNDADGRATLKDFVDVPGVYP 65
           R H  +  +++  +RR  +  P   R++L NKP+DVL QF D  GR TLK+F+ V GVY 
Sbjct: 17  RNHQVKRFSSQRSTRRKPENQPT--RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYA 74

Query: 66  AGRLDRDSEGLLLLTNDGQLQARIADPKHKLPKTYWVQVEGEVSAEQLQRLRDGVELNDG 125
           AGRLDRDSEGLL+LTN+G LQAR+  P  +  K Y+VQVEG  + + L+ LR+GV LNDG
Sbjct: 75  AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG 134

Query: 126 MTLPAEARQLEEPE-LWPRNPPVRFRKSVPTSWLELVIREGRNRQVRRMTAAVGLPTLRL 184
            TLPA A  ++EP  LWPRNPP+R RKS+PTSWL++ + EGRNRQVRRMTA VG PTLRL
Sbjct: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194

Query: 185 VRVRIGPWTLGGLQPGEWREV 205
           +R  +G ++L  L  GEWREV
Sbjct: 195 IRYAMGDYSLDNLANGEWREV 215