Pairwise Alignments

Query, 523 a.a., urea ABC transporter, permease component (from data) from Pseudomonas stutzeri RCH2

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  130 bits (326), Expect = 9e-35
 Identities = 94/297 (31%), Positives = 148/297 (49%), Gaps = 11/297 (3%)

Query: 225 GELLGQAFSGLSLGSILLLAALGLAITFGLLGVINMAHGEMLMLGAYTTYMVQVLMARLA 284
           G  L Q  +GL+LGS+  L A+G  + +G++G+IN AHGE+ M+ AY   +   L+A   
Sbjct: 3   GIFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFG 62

Query: 285 PEALAFYPLVALPVAFFVTAAIGMALERTVIRHLYGRP-LETLLATWGISLILIQLVRVL 343
            E+     L  L     VT   G  +ER   + L     L  L++  GISLIL    ++ 
Sbjct: 63  VESFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQIS 122

Query: 344 FGAQNVEVANPAWLSGGLQVLPN---LVLPYNRMVIIGFALFVVLLTWLLLNKTRLGLNV 400
            GA+   V  P  L G ++V      + L Y ++ I+  A   + L   ++  T+LG   
Sbjct: 123 QGARQQGV--PTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMC 180

Query: 401 RAVTQNRNMAACCGVPTGRIDMLAFGLGSGIAGLGGVALSQIGNVGP-DLGQSYI--IDS 457
           RA  Q+R MA+  G+ T R+    F +G+ +A L GV ++   N G  D    +I  I +
Sbjct: 181 RATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITM--NYGTFDFYAGFIIGIKA 238

Query: 458 FLVVVLGGVGQLAGSIFAAFGLGIANKILEPQIGAVLGKILILALIILFIQKRPQGL 514
           F   VLGG+G L G++     LGI+  +    I +    +   +L+++ +  RPQGL
Sbjct: 239 FTAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGL 295