Pairwise Alignments

Query, 283 a.a., urea ABC transporter, ATP-binding protein UrtD from Pseudomonas stutzeri RCH2

Subject, 596 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  145 bits (365), Expect = 3e-39
 Identities = 97/281 (34%), Positives = 148/281 (52%), Gaps = 23/281 (8%)

Query: 12  GFDPTGGGLTRDAIGLGRVAEKGLDVRHGTILSLEDINVSFDGFKALTDLSLYIGVGELR 71
           G  P G G+       G++   G     G +L ++ +  S+ G K   D+S  +  G + 
Sbjct: 314 GEGPGGNGIP------GQIGPGG----EGELLVVQGVTKSYGGVKPAQDVSFRLQRGHIH 363

Query: 72  CIIGPNGAGKTTMMDVITGKTRPTSGSAWF-GETLDLTRMSEVDIAQAGIGRKFQKPTVF 130
            +IGPNGAGK+TM++++TG   P +G   F G+  ++       I   G+GR FQ   +F
Sbjct: 364 ALIGPNGAGKSTMINMLTGVIEPDAGVIRFLGQ--NIVGQPAHTICCLGMGRTFQNLRLF 421

Query: 131 EALSVFENLELAQKTDKS--------VWASLRAKLSGEQKDRIDEVLETIRLGQSRHRPA 182
             LSV +N+ L + +  S         W +   K     ++R  ++L+ + LG   H PA
Sbjct: 422 ADLSVLDNVMLGRHSRMSNGFLSSLVAWPTA-GKQERATRERALQLLDLVDLGHLAHWPA 480

Query: 183 GLLSHGQKQFLEIGMLLMQSPQLLLLDEPVAGMTDAETEFTAELFKSLAR-KHSLMVVEH 241
           G L +G ++ +E+   L   PQLLLLDEP AG+   ET    EL   + +   S+++VEH
Sbjct: 481 GSLPYGLQRRVELARALATEPQLLLLDEPAAGLNPQETAELGELLLRIGKCGVSILMVEH 540

Query: 242 DMGFVETIADHVTVLHQGQVLAEGSLQQVQADERVIEVYLG 282
            M  V +I+DHV VL  G  +AEG   +VQA+ RV+E YLG
Sbjct: 541 HMDLVMSISDHVIVLDYGIKIAEGKPAEVQANPRVVEAYLG 581