Pairwise Alignments

Query, 804 a.a., DNA gyrase, B subunit from Pseudomonas stutzeri RCH2

Subject, 659 a.a., DNA topoisomerase IV, B subunit, proteobacterial from Pseudomonas stutzeri RCH2

 Score =  353 bits (907), Expect = e-101
 Identities = 213/566 (37%), Positives = 314/566 (55%), Gaps = 24/566 (4%)

Query: 6   TYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDISITI 65
           +Y + +I+VL GLD VRKRPGMY     D +  +H+  EV+DNS+DEALAGH   + + +
Sbjct: 33  SYTAEAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQVIL 88

Query: 66  HTDESITVRDNGRGIPVDIH-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 124
           H D S+ V D+GRG+PVDIH EEGV   E+I+T LHAGGKF + +Y+ SGGLHGVG+SVV
Sbjct: 89  HQDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 148

Query: 125 NALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGETD--SSGTQIHFKPSAETFQNIHF 182
           NALS  + +T++R+G  +   +  G     L  +G     ++GT + F    + F +  F
Sbjct: 149 NALSTRVEVTVKRDGSEYRMSFADGFKATDLEVIGSVGKRNTGTSVRFWADPKYFDSPKF 208

Query: 183 SWDILAKRLRELSFLNSGVGIVLRDERTAKEELFKYEGGLSAFVA-----YLNTNKTPVN 237
           S   L   L+  + L  G+ +   D+ + ++  + YE GL +++      YL     P  
Sbjct: 209 SISRLKHVLKAKAVLCPGLSVSFEDKGSGEKVEWHYEDGLRSYLVDSVSDYLRLPDEPFV 268

Query: 238 EVFHFNVQRDDGVGVEVALQWNDSFNENIL-CFTNNIPQRDGGTHLAGFRSALTRNLNSY 296
                N +      V+ AL W     E++   + N IP   GGTH+ G R  L   +  +
Sbjct: 269 GTLAGNTE-----AVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREF 323

Query: 297 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKH 356
            E   L  +  +    +D  E +  ++S+K+ +P+FS QTK++L S E    V   +   
Sbjct: 324 CEFRNLLPRG-LKLAPEDIWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDA 382

Query: 357 FADFLLEHPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPA 416
           F+ +L  HP     +    I+ A  R    KA +   RK       LPGKLADC  +DP 
Sbjct: 383 FSLWLNAHPELGMQLAELAINNAGRR---LKAGKKVERKKITQGPALPGKLADCAGQDPM 439

Query: 417 LSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGC 476
            +EL++VEGDSAGGSAKQ R+++ QAI+PL+GKILN  +    ++++SQEV  +  A+G 
Sbjct: 440 RAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGV 499

Query: 477 GIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPPLYK 536
             G  +  + +LRY  I I+ DAD DG HI TLL   F +    L+E G+VY+A PPLY+
Sbjct: 500 DPGAAD--LGQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPPLYR 557

Query: 537 VKRGKQEQYIKDDEAMEEYLTQSALE 562
           +  GK   Y  D+   +  L +   E
Sbjct: 558 IDLGKDIFYALDEAERDGILERLVAE 583



 Score = 60.8 bits (146), Expect = 2e-13
 Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 723 LEWLMTEGTR-RHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIGADQIFNTLM 781
           LE L+ E  R +  V R+KGLGEMNP QL ETTMDPN RR++++T++D  G  +I + L+
Sbjct: 577 LERLVAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEGTREIMDMLL 636