Pairwise Alignments

Query, 804 a.a., DNA gyrase, B subunit from Pseudomonas stutzeri RCH2

Subject, 710 a.a., DNA gyrase subunit B from Agrobacterium fabrum C58

 Score =  425 bits (1093), Expect = e-123
 Identities = 247/564 (43%), Positives = 346/564 (61%), Gaps = 20/564 (3%)

Query: 7   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDISITIH 66
           Y +SSI+VL+GL+ VR RPGMYIG TD+   LHH+  EV+DNS+DEA+AGH + I + + 
Sbjct: 72  YGASSIRVLEGLEPVRMRPGMYIGGTDE-KALHHLFAEVIDNSMDEAVAGHANFIEVHLD 130

Query: 67  TDESITVRDNGRGIPVDIHEE--GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 124
            +  +TV DNGRGIPV+ H +  G S  EVIMT LHAGGKFD  +Y+ SGGLHGVGVSVV
Sbjct: 131 AEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVV 190

Query: 125 NALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGETDSS-GTQIHFKPSAETF-QNIHF 182
           NALS+ L + + R  K++ Q +  G P   L  +G+  +  GT++ F P  + F  +  F
Sbjct: 191 NALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRRGTRVRFHPDPQIFGDHAKF 250

Query: 183 SWDILAKRLRELSFLNSGV--------GIVLRDERTAKEELFKYEGGLSAFVAY-LNTNK 233
               + +  R  ++L  GV        G+V  D    ++ +F + GGL  ++A  L    
Sbjct: 251 EPARIFRMARSKAYLFGGVEIRWSCDPGMVPADGEIPEKAVFHFPGGLKDYLAATLGKEF 310

Query: 234 TPVNEVFHFNVQRDDGVG-VEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRN 292
           T   E+F    ++  G G +E A+ W    +  I  + N IP  +GGTH AGFR ALT+ 
Sbjct: 311 TVTREIFSGRTEKTGGHGALEWAVTWYGG-DTQIHSYCNTIPTPEGGTHEAGFRIALTKG 369

Query: 293 LNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 352
           L +Y E     +  +I T  DD       ++SV + +P+F  QTKDKL + E +  VE  
Sbjct: 370 LKNYAELTQNKRAREITT--DDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENA 427

Query: 353 MGKHFADFLLEHPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 412
           +   F  +L  +P EA  ++  +I+ A  R   RK +E+ R K A+    LPGKLADC +
Sbjct: 428 LRDPFDHYLTGNPGEAAKLLDWVIERAEERLRRRKEKEVNR-KTAVRKLRLPGKLADCSQ 486

Query: 413 KDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 472
                +EL+IVEGDSAGGSAKQ RNR  QAILPL+GKILNV  A  +K+ ++Q++  LI 
Sbjct: 487 NTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQQIADLIQ 546

Query: 473 ALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQP 532
           ALGCG  R +Y  + LRY  IIIMTDADVDG+HI +LL+TFF++++PELI   ++Y+A P
Sbjct: 547 ALGCGT-RTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNHLYLAVP 605

Query: 533 PLYKVKRGKQEQYIKDDEAMEEYL 556
           PLY +++G +  Y +DD    E +
Sbjct: 606 PLYVIRQGAKSAYARDDAHRAELM 629



 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 732 RRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDA--IGADQIFNTLMGDAVEPRR 789
           ++  + R+KGLGEM   QL ETTMDP  R +L+V I+D    G  +  + LMG   + R 
Sbjct: 636 KKVEIGRFKGLGEMMAAQLKETTMDPEKRTLLRVEIDDVDFEGTREAVDNLMGTKADARF 695

Query: 790 DFIETNALAVSNLD 803
            FI+  A    NLD
Sbjct: 696 RFIQERAAFADNLD 709