Pairwise Alignments

Query, 688 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  137 bits (346), Expect = 2e-36
 Identities = 140/575 (24%), Positives = 247/575 (42%), Gaps = 26/575 (4%)

Query: 127  EERRARRSAEVALREAEKRCQLLLDSSVDAIAYVHDGMHIYANRAYLELFGYADVEDLEG 186
            ++RRA +   +A    E     +L +  D   Y+     + AN A+  + GYA  E L+ 
Sbjct: 707  QQRRAEKDLRMAATVFEHSTSAILIT--DPAGYI-----VQANEAFSRVSGYAVSEVLDQ 759

Query: 187  MPMIDLISGSDQSTFKAFLKNYQTLEGSAELACGGVRADGETLKTRMHFSPAAYDGEPCI 246
            +P +  +    +   +  +K      GS E      R DG+     +  + A  D E  +
Sbjct: 760  LPGMLTVDEQQEGHLRYVVKQLHQ-RGSWEGEVWLKRRDGDHYPAWVGIT-AVLDDEGDL 817

Query: 247  QVVIRAENDSAEL----QKLREISSQDPVTGLLNRNSFLEVMDAAVERAVNAGQTASLAY 302
               +    D +E     Q++  ++  D +T L NR  F + +  A+++A        L +
Sbjct: 818  ASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMF 877

Query: 303  IRIDRFAALQAEIGLTDSDQLLNQLAILLRGHFPAETQLARFADDVFTVL-QPGVIPQLA 361
            + +DRF  +   +G    D++L  +A+ L      +  +AR   D FT+L QP    ++A
Sbjct: 878  LDLDRFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMA 937

Query: 362  EPELRKLLSKVEGHLLD---VGGRTVQTTLSIGVAGLDEKTAKAQDAIERAHRCADELSD 418
                  +   + G L+    +  R    T SIG+A   +  ++    ++ A        +
Sbjct: 938  LNRAIHVAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKE 997

Query: 419  G--NALKIYDPADELAAAANRGDIAAMLRQALENNSFRLLFQPIISLRGDSFEHYEVLLR 476
               N  + Y  A+  A+A  R ++ + LR A+E N F L +QP  S  G      E LLR
Sbjct: 998  RGKNNFQFYQ-AEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLR 1056

Query: 477  LLDPQGAEVPPNEFLSTAADVGLSAKIDRWVILN-SIKLLAEHRAKGHRTRLFLHLCAAS 535
               P    VPP +F+    ++GL   +  WV+   S +L A H+AK    ++ +++ A  
Sbjct: 1057 WRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKVSVNISARQ 1116

Query: 536  LQDPSLLPWLGVVLKASRLPGDSLVFEFGEADAVAYLKPAKALAQGLRGLGCHIGLAQFG 595
              D  L   +  +L+ S LP   L  E  E+  +  +  A  +   L+ LG  I +  FG
Sbjct: 1117 FSDGQLGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFG 1176

Query: 596  CVLNPFNTLKHLDAGFIKVDGSYTQDLTR-QENQEALKTLLADLHEQQKQSIVPFVESAT 654
               +  N LK      +K+D ++   L   +++ +  + ++A  H      I   VE+  
Sbjct: 1177 TGYSSLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHE 1236

Query: 655  VLATLWQAGVSYIQGHYLQG---PSQSMDYDFSSD 686
             L  L + G   +QG YL G   P+   +  FS++
Sbjct: 1237 QLEFLREHGCDEVQG-YLFGRPMPAHQFEAQFSNE 1270