Pairwise Alignments

Query, 750 a.a., DNA topoisomerase IV, A subunit, proteobacterial from Pseudomonas stutzeri RCH2

Subject, 878 a.a., DNA gyrase, A subunit from Enterobacter asburiae PDN3

 Score =  386 bits (992), Expect = e-111
 Identities = 262/769 (34%), Positives = 420/769 (54%), Gaps = 73/769 (9%)

Query: 22  EQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLNADAKHKKSARTVGDVLGKF 81
           + +YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG + +  +KKSAR VGDV+GK+
Sbjct: 18  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 77

Query: 82  HPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRYSEVLLS 141
           HPHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D   S AAMRYTE R+S+ +  L++
Sbjct: 78  HPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG-DSAAAMRYTEIRMSKIAHELMA 136

Query: 142 ELGQGTVEWVPNFDGTLDEPATLPARLPNLLLNGTTGIAVGMATDVPPHNLREVAAACVR 201
           +L + TV++V N+DGT   P  +P ++PNLL+NG++GIAVGMAT++PPHN+ EV   C+ 
Sbjct: 137 DLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVINGCLA 196

Query: 202 LLDEPSASVEQLCEHVRGPDFPTEAEIITPRADLLKIYETGRGSVRMRAVYRVEDG---- 257
            +D+   S+E L EH+ GPDFPT A II  R  + + Y TGRG + +RA   VE      
Sbjct: 197 YIDDEDISIEGLMEHIPGPDFPT-AAIINGRRGIEEAYRTGRGKIYIRARAEVEADAKTG 255

Query: 258 --DIVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPCRIVIIPRSNRVDV 315
              I+V  +P+QV+ ++++E+IA  ++ K++  ++ LRDESD +   RIVI  + + V  
Sbjct: 256 RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG-MRIVIEIKRDAVG- 313

Query: 316 EGLMQHLFATTDLESSYRVNANVIGLDGRPQVKNLRTLLSEWLTYRIGTVRRRLQFRLDK 375
           E ++ +L++ T L+ S+ +N   +   G+P++ NL+ +LS ++ +R   V RR  F L K
Sbjct: 314 EVVLNNLYSQTQLQVSFGINMVALH-HGQPKIMNLKEILSAFVRHRREVVTRRTIFELRK 372

Query: 376 VEKRLHLLEGLLVAFLNLDEVIHIIR---TEDQPKPVLMAR------------------- 413
              R H+LE L VA  N+D +I +IR   T  + K  L++R                   
Sbjct: 373 ARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLISRPWDLGNVAAMLERAGDDAA 432

Query: 414 ---------------FELSELQADYILDTRLRQLARLEEMKIRGEQDELAKEREKLLALL 458
                          + L+E QA  ILD RL++L  LE  K+  E  EL ++  +LL +L
Sbjct: 433 RPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHIL 492

Query: 459 GSEAKLKKLVRKELLADAETYGDARRSPIVERAEARALSENELLPSEPVTVVISEKGWAR 518
           GS  +L +++R+EL    + +GDARR+ I   A +  ++  +L+  E V V +S +G+ +
Sbjct: 493 GSAERLMEVIREELELVRDQFGDARRTEIT--ANSSDINIEDLINREDVVVTLSHQGYVK 550

Query: 519 CAKGHDIDA--------TGLSYKAGDGFKTAAAGRSNQYAVFIDSTGRSYSLAAHSLPSA 570
                D +A        +    K  D         ++   +   S GR Y +  + LP A
Sbjct: 551 YQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEA 610

Query: 571 -RG-QGEPLTGRLAPPPGASFECVLLP----EDDALYVIASDAGYGFVVKGEDLQAKNKA 624
            RG +G P+   L P         +LP    E+     +A+ +G        +      A
Sbjct: 611 SRGARGRPIV-NLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSA 669

Query: 625 GKALLSLPKGAKVVAPRPLASRDDDWLAAVTTEGRLLVFPVRDLPQLGKGKGNKIIGIPG 684
           G   ++L +G +++     +  D+  L   +  G+++ F    +    +  G    G+ G
Sbjct: 670 GIIAVNLNEGDELIGVDLTSGSDEVML--FSAAGKVVRFKENAV----RAMGRTATGVRG 723

Query: 685 ERVASREEYLIDLALLPAGATLVLQAGKRTLSLKAEDLEHYKGERGRRG 733
            ++A  E+ ++ L ++P G   +L   +     +  + E+    RG +G
Sbjct: 724 IKLAG-EDSVVSL-IIPRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQG 770