Pairwise Alignments

Query, 750 a.a., DNA topoisomerase IV, A subunit, proteobacterial from Pseudomonas stutzeri RCH2

Subject, 906 a.a., DNA gyrase subunit A from Agrobacterium fabrum C58

 Score =  380 bits (975), Expect = e-109
 Identities = 249/726 (34%), Positives = 397/726 (54%), Gaps = 67/726 (9%)

Query: 22  EQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLNADAKHKKSARTVGDVLGKF 81
           +++YL+Y+M VI+ RALP + DGLKPV RRI+Y MSELG++ + K+ K AR  GDV+GKF
Sbjct: 2   QRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKF 61

Query: 82  HPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTEARLSRYSEVLL 140
           HPHG+SA Y+A+  MAQ +S R  L+DGQGN+G+ D DP   AA RYTE RL + +  LL
Sbjct: 62  HPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPP--AAERYTECRLEKAAHSLL 119

Query: 141 SELGQGTVEWVPNFDGTLDEPATLPARLPNLLLNGTTGIAVGMATDVPPHNLREVAAACV 200
            +L + TV++  N+DGTL EP  +PA+ PNLL+NG  GIAVGMAT++PPHNL EV   CV
Sbjct: 120 DDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCV 179

Query: 201 RLLDEPSASVEQLCEHVRGPDFPTEAEIITPRADLLKIYETGRGSVRMRAVYRVED--GD 258
            L++ P+  + ++ + + GPDFPT A +I  R+ +   YETGRGSV MR V  +E   GD
Sbjct: 180 ALIENPAIELPEMMQIIPGPDFPTGA-LIMGRSGIRSAYETGRGSVIMRGVATIEPMRGD 238

Query: 259 ---IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPCRIVIIPRSNRVDV 315
              I++T +P+QV+ + ++E++A  ++ K++  ++DLRDESD +     V+I      + 
Sbjct: 239 REQIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQG--YRVVIELKRDANA 296

Query: 316 EGLMQHLFATTDLESSYRVNANVIGLD-GRPQVKNLRTLLSEWLTYRIGTVRRRLQFRLD 374
           E ++  L+  T L++S+    N++ L+ G+P+   L  +L  ++++R   V RR ++ L 
Sbjct: 297 EVILNQLYRYTPLQTSF--GCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLR 354

Query: 375 KVEKRLHLLEGLLVAFLNLDEVIHIIRTEDQP---KPVLMAR------------------ 413
           K   R H+L GL ++  N+DEVI +IR    P   +  LM R                  
Sbjct: 355 KARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPR 414

Query: 414 --------FELSELQADYILDTRLRQLARLEEMKIRGEQDELAKEREKLLALLGSEAKLK 465
                   + LSE QA  IL+ RL +L  L   +I  E +++  E  + L +L S  +++
Sbjct: 415 HRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQ 474

Query: 466 KLVRKELLADAETYGDARRSPIVERAEARALSENELLPSEPVTVVISEKGWA-------- 517
           ++V+ EL++  + +G  RRS IVE      + + +L+  E + V +S  G+         
Sbjct: 475 QIVKDELVSIRDEFGTPRRSQIVEGGP--DMDDEDLIAREDMVVTVSHLGYIKRVPLTTY 532

Query: 518 RCAKGHDIDATGLSYKAGDGFKTAAAGRSNQYAVFIDSTGRSYSLAAHSLP--SARGQGE 575
           R  +      +G++ +  D         ++   +F  S G  Y      LP  + + +G+
Sbjct: 533 RAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKGK 592

Query: 576 PLTGRLAPPPGASFECVL-LPEDDALY-----VIASDAGYGFVVKGEDLQAKNKAGKALL 629
            L   L   PG     ++ LPED+  +     + ++  G     K  D    N+ GK  +
Sbjct: 593 ALINMLPLEPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAM 652

Query: 630 SL-PKGAKVVAPRPLASRDDDWLAAVTTEGRLLVFPVRDLPQLGKGKGNKIIGIPGERVA 688
            L  +G ++++      RDD  +   T  G+ + FPV D+       G   +G+ G  +A
Sbjct: 653 KLDEEGDEILSVETCTDRDD--VLLTTALGQCIRFPVDDVRVFA---GRNSVGVRGINMA 707

Query: 689 SREEYL 694
             +  +
Sbjct: 708 EGDRII 713