Pairwise Alignments

Query, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1169 a.a., Signal transduction histidine kinase from Pseudomonas stutzeri RCH2

 Score =  218 bits (556), Expect = 1e-60
 Identities = 259/1014 (25%), Positives = 413/1014 (40%), Gaps = 144/1014 (14%)

Query: 14  FLAAFVLLAALGWQGARTQEALLQTNRSVSHSLEVITSVQAILTSLQDIETGSRGFILTG 73
           FL+AF   A + +        LL     V  S++ +      L  + D+ETG RG+++ G
Sbjct: 27  FLSAFFFSAIVYY--------LLSVGHWVEQSVKGVAHAHEALRLVADLETGLRGYLIAG 78

Query: 74  DASYLEPYERGLKQLEGYRRSLEQLVEGRSYPDVRWFRTLDATIAERLQVAAGNVQARRD 133
           +  +L+PY +GL Q+E   R L+ L        ++  R      A  L +A       R 
Sbjct: 79  EEPFLDPYRQGLGQME---RELDALKVYAGSDPLQLSRLEKIDAAHHLWLAFAEEGISRR 135

Query: 134 AGLQAAADHLRDAGGNLLMDRLRALLN---AVEQQERRQLAAASSAVTQTTERAQ---RL 187
           A  +   D++R   G  L ++ R LLN   A E+Q R Q    S  +T           L
Sbjct: 136 AAGEPVVDYVRTRRGLDLTNQRRNLLNEFIAEERQLRAQRTDTSEVITTALIGGFLLFSL 195

Query: 188 VLIGSLVVVA---------LFLIAFWAVHRNLRIRQQLA----GAAQAGEARLGAL---- 230
           +  G LV +           +       H +    +Q A    G  Q  ++ +G L    
Sbjct: 196 IFSGMLVYLGRRDLTSLSTTYSELLGKQHAHAEALEQQAWYRTGQTQLSDSIIGELALPA 255

Query: 231 ---------------------------LQAIPDYLYAVDHQQQVSSLAAGT-----ARRA 258
                                      LQ + +Y Y  DH Q   +L  GT     A   
Sbjct: 256 LGQGVLNFLSRYIDAAVGALYVVQDGKLQRVAEYAYDPDHLQSGRTLNVGTGLVGQAALE 315

Query: 259 PPPAAIEPLLHDLLQQREDSGLRQTTWCELQTRRTFEVRLMPTGLGDHLAIARDISELQR 318
               A+E L  D L+     G       +   R    V +  +G+         + EL  
Sbjct: 316 RRVMALEDLPADYLKVTSALG-------DTAPRSVLIVPVEDSGM------LNGVIELGF 362

Query: 319 SRDSLHDQQLFLRRVVDTDDNLIFV---RDAQGRFLLCNTALSALLDVRPQDIEQRHPDE 375
            R         LRR+  +  + I     R    + L     L+  L V+ +++   + + 
Sbjct: 363 LRPLREQDSELLRRIAPSIASAIEAARYRQRLQKVLAETQQLNEELQVQQEELRAANEEL 422

Query: 376 VPSARLLRPLLLDDDELAALASGSGELRTTEVAL---TDALGTEHWFQVIKRPLRTSART 432
              +  LR      +  A +     EL  T   L   T+AL  +   Q+ ++  R +   
Sbjct: 423 EEQSNALR------ESQAHMEEQQAELEQTNEQLAEQTEALARQR-DQMDEKNQRLNEAQ 475

Query: 433 CHVVTVAVDVSLRRRMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQVSDEARPL 492
             +   A ++   +R  + K+EF++ +SHELRTPL +      +L    AG +SDE    
Sbjct: 476 LMLEQRADEL---QRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPAGNLSDEQVQF 532

Query: 493 LGIAHKNSERLVRLINDILDIEKLEAGRLTFNFGRHDVRPLVQQALSDITPYGQDYGVSL 552
               +     L+ LINDILDI K+EAG+   +     +  LV    +   P   +  +  
Sbjct: 533 ARSIYSAGNDLLTLINDILDISKVEAGKFEVHPELTILSRLVDGMKNLFLPQAMERSLQF 592

Query: 553 EFLDAPELTSSEATLDPDRFAQVMANLLSNAIKHSPAGGCVTVDLRRRGKLLEIGVQDRG 612
               A +L +S  T D  R  Q++ NLL+NA K +  G        R   LL   V+D G
Sbjct: 593 SVELADDLPASLFT-DRQRLEQILKNLLANAFKFTEKGSVTLRVEPRDDDLLAFAVRDTG 651

Query: 613 PGIPEAFRSRIFERFAQADSSDARQRGGTGLGLAITRSLVQQMHGKIGFDCQPDQGTRFW 672
            GI +  ++ IFE F QAD +  R+ GGTGLGL+I+R L   + G+I     P  G+ F 
Sbjct: 652 IGIAQEQQAVIFEAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFT 711

Query: 673 LQLPLE-------------------------EHPQQVQAPAQPLIHGSAPQQ-------- 699
           L +P                           E PQ+   P  P    SAP Q        
Sbjct: 712 LVVPQSYSEARVAEPLVVEPSSSPSLPSRPVEPPQRRAEPQAPRHAVSAPPQRLPDDRDR 771

Query: 700 ----TPLILILEPDSHAAEQLAEALHQHGYATLIAHAAAEARELLGQHRVQALTLSPALD 755
                  +L++E +   A  L +  H+  Y+ L+A  A +  +   Q++  A+ L   L 
Sbjct: 772 FPFKERCVLVIEDEPQFARILHDLAHELQYSCLLAQNADDGFDTALQYKPDAILLDMRLP 831

Query: 756 DENSVAFLQSLRSQQHYRSLPVLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKPIDPSRVM 815
           D + +  L+ L+     R +PV +VS++    D  +  ++ GAVG   +  KP     + 
Sbjct: 832 DHSGLTVLERLKENPATRHIPVHVVSVE----DRKEAAMQMGAVG---YAMKPTTREELK 884

Query: 816 EVI-RACLQIGGLKPRILHVEDDDDLRVLLAKQIASLDVELAGAATLHEARQLISAQPFD 874
           +V  R   ++     RIL VEDD   R  +++ I  +D+E+       +A + +    FD
Sbjct: 885 DVFSRLEAKLAQKVKRILLVEDDALQRESMSRLIEDVDIEITAVEFGAQALEQLRDTVFD 944

Query: 875 LAIIDLMLPDGDGSELFDQLAQS--IPPPPVIIFSALDTPIQDNRLALRQLVKS 926
             IIDL LPD DGSEL +++A+      PPVI+++  +   +D   AL +  +S
Sbjct: 945 CMIIDLKLPDMDGSELLERMAKEDICSFPPVIVYTGRNL-TRDEEAALLKYSRS 997



 Score = 46.6 bits (109), Expect = 1e-08
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 703  ILILEPDSHAAEQLAEALHQHGYATLIAHAAAEARELLGQHR--VQALTLSPALDDENSV 760
            IL+++ D      L  AL Q G    IA    EA + L QH   +  + +   + + +  
Sbjct: 1047 ILVVDDDVRNVFALTSALEQKGALVEIARNGLEAIDKL-QHDTDIDLVLMDIMMPEMDGF 1105

Query: 761  AFLQSLRSQQHYRSLPVLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKPIDPSRVMEVIRA 820
              +Q +R    +  LP++ V+ +  + D+D  L    + G  D+L KPID  R+  +IR 
Sbjct: 1106 TAMQEIRKDVRFAKLPIIAVTAKAMKDDQDRCL----SAGANDYLAKPIDLDRLFSLIRV 1161

Query: 821  CL 822
             L
Sbjct: 1162 WL 1163



 Score = 34.7 bits (78), Expect = 4e-05
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 25/223 (11%)

Query: 698  QQTPLILILEPDSHAAEQLAEALHQHGYATLIAHAAAEARELLGQHRVQALTLSPALDDE 757
            Q+   IL++E D+   E ++  +             A+A E L       + +   L D 
Sbjct: 896  QKVKRILLVEDDALQRESMSRLIEDVDIEITAVEFGAQALEQLRDTVFDCMIIDLKLPDM 955

Query: 758  NSVAFLQSLRSQQHYRSLPVLIVSLQPQRRDEDDGLLRGGAVGVID-------------- 803
            +    L+ +  +      PV++ + +   RDE+  LL+     +I               
Sbjct: 956  DGSELLERMAKEDICSFPPVIVYTGRNLTRDEEAALLKYSRSIIIKGARSPERLLDEVTL 1015

Query: 804  WLHK---PIDPSRVMEVIRACLQIGGLKPRILHVEDDDDLRVL-----LAKQIASLDVEL 855
            +LHK    + P R   +  A  +    + R + V DDD   V      L ++ A +++  
Sbjct: 1016 FLHKVESDMPPERQKMLKSARSREKAFEGRKILVVDDDVRNVFALTSALEQKGALVEIAR 1075

Query: 856  AGAATLHEARQLISAQPFDLAIIDLMLPDGDGSELFDQLAQSI 898
             G   L    +L      DL ++D+M+P+ DG     ++ + +
Sbjct: 1076 NG---LEAIDKLQHDTDIDLVLMDIMMPEMDGFTAMQEIRKDV 1115