Pairwise Alignments

Query, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

 Score =  164 bits (416), Expect = 2e-44
 Identities = 156/565 (27%), Positives = 251/565 (44%), Gaps = 84/565 (14%)

Query: 391 ELAALASGSGELRTTEVALTDALGTEHWFQVIKRPLRTSARTCHVVTVAVDVSLRRRME- 449
           EL  LA G   +  T     + L  +H        +R +  T  +  + +D++ +  +E 
Sbjct: 225 ELDELAHGINRMAETLQNAHEEL--QHSIDQATEDVRQNLETIEIQNIELDMARKEALEA 282

Query: 450 -QMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQVSDEARPLLGIAHKNSERLVRLIN 508
            ++K+EF++ +SHE+RTPL  I G   +L      +++      L    K+++ L+ +IN
Sbjct: 283 SRIKSEFLANMSHEIRTPLNGILGFTHLLQ---KSEMTPRQLDYLNTIEKSADNLLGIIN 339

Query: 509 DILDIEKLEAGRLTFNFGRHDVRPLVQQALSDITPYG---QDYGVSLEFLDAPELTSSEA 565
           +ILD  K+EAG+L  +    ++R L+Q  L+ + P     Q   +SL + D P    +  
Sbjct: 340 EILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTP----ASL 395

Query: 566 TLDPDRFAQVMANLLSNAIKHSPAGGCVT----VDLRRRGKLLEIGVQDRGPGIPEAFRS 621
             DP R  Q++ NL+SNAIK +  G  V      D       L I VQD G G+      
Sbjct: 396 VGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVR 455

Query: 622 RIFERFAQADSSDARQRGGTGLGLAITRSLVQQMHGKIGFDCQPDQGTRFWLQLPL-EEH 680
            +F+ F+QAD+S ARQ GGTGLGL I++ L++QM G+IG D  P +G++FW+ L L + H
Sbjct: 456 TLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNLPKAH 515

Query: 681 PQQVQAPAQPLIHGSAPQQTPLILILEPDSHAAE----------------QLAEALHQHG 724
                 P QPL+   A       L  +   H  E                Q  +A  Q G
Sbjct: 516 DDAEALPPQPLLGRRAAIVDGHELARQALEHQLEDCGLSVSLFASYDQLLQGVQAASQAG 575

Query: 725 ----YATLIAHAAAEARELLG-------QHRVQALTLSPALDDENSVAFL-----QSLRS 768
               +A L A+    + E LG       ++  Q + L P  +      +L     Q L  
Sbjct: 576 LPFEFAVLGANLGNLSPEQLGHYHQQLERYHCQCVVLCPTTEQALYHPYLPNGHGQLLSK 635

Query: 769 QQHYRSLPVLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKPIDPSRVMEVIRACLQIGGLK 828
               R L  L++ L   RR   +G                 +P+            G  +
Sbjct: 636 PTCTRKLRRLLLELVQPRRPLAEG----------------SNPN------------GQRR 667

Query: 829 PRILHVEDDDDLRVLLAKQIASLDVELAGAATLHEARQLISAQPFDLAIIDLMLPDGDGS 888
           P+IL V+D+    +L+   +  L  E+      + A Q +  + FDL ++D+ +P  DG 
Sbjct: 668 PKILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDGR 727

Query: 889 ELFDQL-----AQSIPPPPVIIFSA 908
              +Q+      QS  P P++  +A
Sbjct: 728 ACTEQIRLWENTQSGNPLPIVALTA 752