Pairwise Alignments

Query, 300 a.a., ABC-type spermidine/putrescine transport system, permease component II from Pseudomonas stutzeri RCH2

Subject, 275 a.a., Polyamine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  148 bits (373), Expect = 2e-40
 Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 11/270 (4%)

Query: 2   RRWSFSNLILV-LGLLFIYLPMVILVIYSFNA-SRLVTVWGGWSLKWYAGLLDNSQLMGA 59
           R W +S  IL  L LLF+ LP++++V  SFN+ S LV    G+SL+WY     +++ M A
Sbjct: 11  RVWFYSLRILCGLILLFLILPVLVIVPLSFNSGSFLVYPLQGFSLQWYQDFFGSAEWMRA 70

Query: 60  VMRSLEVAAYTAVAAVALGTMAAFVLTRIPVFRGRTLFGGLVTAPLVMPEVITGLSLLLL 119
           +  S+ VA    V A+  GT+AA  LTR   F G++L   LV +P+V+P VI G++  L 
Sbjct: 71  LKNSIIVAPAATVLAMVFGTLAAIGLTRGD-FPGKSLVMALVISPMVVPVVIIGVASYLF 129

Query: 120 FVAMAQLVGWPAQRGLVTIWIAHTTFCSAYVAVVVMARLRELDLSIEEAAMDLGARPWKV 179
           F  +             ++ + H      +V + V A L+  + ++  AA  LGA P   
Sbjct: 130 FAPLGM------GNSFTSLILVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGASPLLA 183

Query: 180 FFLITMPMIAPSLAAGGMLSFALSLDDLVLASFVSGPGSTTLPMEIFSAVRLGVKPEINA 239
           F  +T+P+IAP + +G + +FA S D++V+  F++GP   TLP ++FS +R  + P I A
Sbjct: 184 FRRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAA 243

Query: 240 VASLIL-LSVSLATFLAWYLTRRAEKRRVR 268
            A+L++  SV L   L W L  R+EK R +
Sbjct: 244 AATLLIAFSVLLLLTLEW-LRGRSEKLRTQ 272