Pairwise Alignments

Query, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

Subject, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  250 bits (639), Expect = 5e-71
 Identities = 154/336 (45%), Positives = 212/336 (63%), Gaps = 26/336 (7%)

Query: 145 TAQESFVSCSQAGRRLLAMAQRVSLTRAPILITGETGTGKELMARYIHRFSASPDAPFIA 204
           TAQ    + SQA   LLA  Q+V+ + A +LI GETGTGKEL+AR+IH  S   + PF+A
Sbjct: 19  TAQVFEDARSQA---LLAHLQQVAPSEASVLIIGETGTGKELVARHIHNLSGRRNGPFVA 75

Query: 205 VNCAAIPEQMLESILFGHEKGAFTGAVSAQPGKFELANGGTLLLDEIGELPLGLQAKLLR 264
           VNC A  E ++E+ LFGHEKGAFTGA++A+ G FE  NGGTL LDEIG+LP+ +Q KLLR
Sbjct: 76  VNCGAFSESLVEAELFGHEKGAFTGALAAKAGWFEEGNGGTLFLDEIGDLPMAIQVKLLR 135

Query: 265 VLQEQRVERLGGRREIELNVRIIAATNRDLQQEVAEGRFRADLMFRLDVLPLHISPLRER 324
           VLQE+ V RLG R+ I ++VR++AATN  L + +A G FR DL +RL+V+ L + PLRER
Sbjct: 136 VLQEREVVRLGSRKSIPIDVRVVAATNVQLDKAIAAGNFREDLYYRLNVVSLQLYPLRER 195

Query: 325 KEDVLPLARRFIGKYAPQEAHDEL-LTEDACRALLQHDWPGNARELENTVQRA-LVLRNG 382
             D+LPL R FI  Y  +  + E+ L+ +A R L+ +DWPGN RELEN +    LV RNG
Sbjct: 196 PGDILPLTRHFIKTYCNRLGYGEVRLSPEAERKLVSYDWPGNIRELENVIHHTLLVCRNG 255

Query: 383 LFIQPQDLGLAAPAAASVRVEK----PLTLAAENGKAALRASGKWAE------YQHVIDT 432
           L +Q  DL L     + +R+E+    P++ A    +  LRA  +  E      ++ V D+
Sbjct: 256 L-VQDDDLRL-----SHLRIERQDKSPVSTAESAEEQLLRAFQRLFEEQAGGLHEKVEDS 309

Query: 433 IRR-----FDGHKTKAAASLGMTSRALRYRLNAMRE 463
           + R        ++   A+ LG++    R RL A+ E
Sbjct: 310 LLRSAYRFCHCNQVHTASLLGLSRNITRARLIAIGE 345