Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

Subject, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

 Score =  133 bits (334), Expect = 4e-36
 Identities = 88/225 (39%), Positives = 116/225 (51%), Gaps = 13/225 (5%)

Query: 21  APGAEQRWLMQYLPLVKRIVRQLSLQANQVLDREDMEQIGMIGLLEGLRRY-GEPDEQFG 79
           A  A+   + +Y PLVKRI   L  +    +  ED+ Q GMIGLLE   +Y       F 
Sbjct: 13  AKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFE 72

Query: 80  RFAALRIRGAILDELRRQDWRPRQVRQQAHKVRDAIRELTRQLGHSPSDEEIKTFTGLDE 139
            +A +RIRGA+LDE+R+ DW PR V +    V DA+R +  + G    D E+     L  
Sbjct: 73  TYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAELQLSL 132

Query: 140 KDYQAFLWADSSEAIESLDELLQSG-HEHFPDTAE---------LFEERLLKERLLEQAL 189
            DY   L       + S D+LLQ G HE   +            L EER   +  L +A+
Sbjct: 133 DDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERF--QAALTEAI 190

Query: 190 SRLDERERLVLTLYYQHELSLKEIALVLEVSDARVCQLSKQAIGK 234
           + L ERERLVL LYY  EL+LKEI  VL VS++RV QL  Q   +
Sbjct: 191 ANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAAR 235